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    <title>Boer, J. de</title>
    <link>http://repub.eur.nl/res/aut/4215/</link>
    <description>List of Publications</description>
    <language>en</language>
    <image>
      <url>http://repub.eur.nl/static-eur/img/logo.png</url>
      <title>RePub, Erasmus University Rotterdam</title>
      <link>http://repub.eur.nl</link>
    </image>
    <item>
      <title>Rescue of progeria in trichothiodystrophy by homozygous lethal Xpd alleles. (Article)</title>
      <link>http://repub.eur.nl/res/pub/14100/</link>
      <pubDate>2006-10-30T00:00:00Z</pubDate>
      <description>Although compound heterozygosity, or the presence of two different mutant alleles of the same gene, is common in human recessive disease, its potential to impact disease outcome has not been well documented. This is most likely because of the inherent difficulty in distinguishing specific biallelic effects from differences in environment or genetic background. We addressed the potential of different recessive alleles to contribute to the enigmatic pleiotropy associated with XPD recessive disorders in compound heterozygous mouse models. Alterations in this essential helicase, with functions in both DNA repair and basal transcription, result in diverse pathologies ranging from elevated UV sensitivity and cancer predisposition to accelerated segmental progeria. We report a variety of biallelic effects on organismal phenotype attributable to combinations of recessive Xpd alleles, including the following: (i) the ability of homozygous lethal Xpd alleles to ameliorate a variety of disease symptoms when their essential basal transcription function is supplied by a different disease-causing allele, (ii) differential developmental and tissue-specific functions of distinct Xpd allele products, and (iii) interallelic complementation, a phenomenon rarely reported at clinically relevant loci in mammals. Our data suggest a re-evaluation of the contribution of "null" alleles to XPD disorders and highlight the potential of combinations of recessive alleles to affect both normal and pathological phenotypic plasticity in mammals.</description>
    </item> <item>
      <title>Nucleotide excision repair and human syndromes (Article)</title>
      <link>http://repub.eur.nl/res/pub/3166/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>DNA damage is implicated in cancer and aging, and several DNA repair mechanisms exist that safeguard the genome from these deleterious consequences. Nucleotide excision repair (NER) removes a wide diversity of lesions, the main of which include UV-induced lesions, bulky chemical adducts and some forms of oxidative damage. The NER process involves the action of at least 30 proteins in a 'cut-and-paste'-like mechanism. The consequences of a defect in one of the NER proteins are apparent from three rare recessive syndromes: xeroderma pigmentosum (XP), Cockayne syndrome (CS) and the photosensitive form of the brittle hair disorder trichothiodystrophy (TTD). Sun-sensitive skin is associated with skin cancer predisposition in the case of XP, but remarkably not in CS and TTD. Moreover, the spectrum of clinical symptoms differs considerably between the three syndromes. CS and TTD patients exhibit a spectrum of neurodevelopmental abnormalities and, in addition, TTD is associated with ichthyosis and brittle hair. These typical CS and TTD abnormalities are difficult to comprehend as a consequence of defective NER. This review briefly describes the biochemistry of the NER process, summarizes the clinical features of the NER disorders and speculates on the molecular basis underlying these pleitropic syndromes.</description>
    </item> <item>
      <title>Nucleotide excision repair and human syndromes (Article)</title>
      <link>http://repub.eur.nl/res/pub/9273/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>DNA damage is implicated in cancer and aging, and several DNA repair
      mechanisms exist that safeguard the genome from these deleterious
      consequences. Nucleotide excision repair (NER) removes a wide diversity of
      lesions, the main of which include UV-induced lesions, bulky chemical
      adducts and some forms of oxidative damage. The NER process involves the
      action of at least 30 proteins in a 'cut-and-paste'-like mechanism. The
      consequences of a defect in one of the NER proteins are apparent from
      three rare recessive syndromes: xeroderma pigmentosum (XP), Cockayne
      syndrome (CS) and the photosensitive form of the brittle hair disorder
      trichothiodystrophy (TTD). Sun-sensitive skin is associated with skin
      cancer predisposition in the case of XP, but remarkably not in CS and TTD.
      Moreover, the spectrum of clinical symptoms differs considerably between
      the three syndromes. CS and TTD patients exhibit a spectrum of
      neurodevelopmental abnormalities and, in addition, TTD is associated with
      ichthyosis and brittle hair. These typical CS and TTD abnormalities are
      difficult to comprehend as a consequence of defective NER. This review
      briefly describes the biochemistry of the NER process, summarizes the
      clinical features of the NER disorders and speculates on the molecular
      basis underlying these pleitropic syndromes.</description>
    </item> <item>
      <title>Transcription-coupled and global genome repair differentially influence Ultraviolet-B induced acute skin effects and systemic immunosuppression (Article)</title>
      <link>http://repub.eur.nl/res/pub/3173/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Exposure to UV-B radiation impairs immune responses in mammals by inhibiting especially Th1-mediated contact hypersensitivity and delayed-type hypersensitivity. Immunomodulation is not restricted to the exposed skin, but is also observed at distant sites, indicating the existence of mediating factors such as products from exposed skin cells or photoactivated factors present in the superficial layers. DNA damage appears to play a key role, because enhanced nucleotide excision repair (NER) strongly counteracts immunosuppression. To determine the effects of the type and genomic location of UV-induced DNA damage on immunosuppression and acute skin reactions (edema and erythema) four congenic mouse strains carrying different defects in NER were compared: CSB and XPC mice lacking transcription-coupled or global genome NER, respectively, as well as XPA and TTD/XPD mice carrying complete or partial defects in both NER subpathways, respectively. The major conclusions are that 1) transcription-coupled DNA repair is the dominant determinant in protection against acute skin effects; 2) systemic immunomodulation is only affected when both NER subpathways are compromised; and 3) sunburn is not related to UV-B-induced immunosuppression.</description>
    </item> <item>
      <title>Transcription-coupled and global genome repair differentially influence UV-B-induced acute skin effects and systemic immunosuppression (Article)</title>
      <link>http://repub.eur.nl/res/pub/9382/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Exposure to UV-B radiation impairs immune responses in mammals by
      inhibiting especially Th1-mediated contact hypersensitivity and
      delayed-type hypersensitivity. Immunomodulation is not restricted to the
      exposed skin, but is also observed at distant sites, indicating the
      existence of mediating factors such as products from exposed skin cells or
      photoactivated factors present in the superficial layers. DNA damage
      appears to play a key role, because enhanced nucleotide excision repair
      (NER) strongly counteracts immunosuppression. To determine the effects of
      the type and genomic location of UV-induced DNA damage on
      immunosuppression and acute skin reactions (edema and erythema) four
      congenic mouse strains carrying different defects in NER were compared:
      CSB and XPC mice lacking transcription-coupled or global genome NER,
      respectively, as well as XPA and TTD/XPD mice carrying complete or partial
      defects in both NER subpathways, respectively. The major conclusions are
      that 1) transcription-coupled DNA repair is the dominant determinant in
      protection against acute skin effects; 2) systemic immunomodulation is
      only affected when both NER subpathways are compromised; and 3) sunburn is
      not related to UV-B-induced immunosuppression.</description>
    </item> <item>
      <title>A Mouse Model for Trichothiodystrophy (Doctoral Thesis)</title>
      <link>http://repub.eur.nl/res/pub/19724/</link>
      <pubDate>1999-01-27T00:00:00Z</pubDate>
      <description>Nucleotide excision repair (NER) is a versatile DNA repair mechanism that
safeguards the genome from many types of DNA damages. The importance ofNER
is highlighted by three inherited human disorders with defective NER: xeroderma
pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). XP
patients display enhanced susceptibility to sunlight-induced skin cancer, but CS and
TTD are not associated with increased cancer susceptibility despite an NER defect.
Moreover, CS and TID patients are characterized by a broad range of
neurodevelopmental abnormalities, which al:e difficult to rationalise as a
consequence of a defect in NER. One of the NER genes, XPD, is implicated in XP,
XP with combined features of CS, and TTD. XPD is a subunit of the dually
functional transcription factor IIH (TFIIH) complex, involved in NER and basal
transcription initiation. It was hypothesized that mutations in XPD may not only
affect NER, causing XP and photosensitivity in TID, but may also impair the
tTanscription function of TFIIH accounting for the neurodevelopmental
abnormalities in CS and TID. The aim of the work outlined in this thesis is to gain
insight into the molecular basis of the clinical symptoms associated with defects in
the XPD gene, and into the enigmatic difference in cancer predisposition between
XP and TTD patients. To accomplish this, we aimed at generating mouse models
for XP, CS and TID. Therefore, disease-specific mutations identified in the XPD
gene of XP, XP/CS and photosensitive TID patients were mimicked in the mouse
XPD gene via homologous recombination in embryonic stem cells. Chapter 1 of
this thesis reviews the NER mechanism and the clinical symptoms associated with
XP, CS and TID. In chapter 2, literature on NER-deficient mouse models is
reviewed and the phenotypical consequence of the role of NER proteins in DNA
repair, mitotic recombination and transcription is discussed. Chapter 3 and 4
describe the generation and characterization ofaXPD knockout and TID mouse
model respectively. Further analysis of the TID mouse model revealed cancer
predisposition and signs of premature aging as described in Chapter 5 and 6.</description>
    </item> <item>
      <title>Cancer from the outside, aging from the inside: mouse models to study the consequences of defective nucleotide excision repair. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3155/</link>
      <pubDate>1999-01-01T00:00:00Z</pubDate>
      <description>In recent years, mouse models have been generated to study the syndromes associated with a defect in nucleotide excision repair (NER). Thus, via conventional knockout gene targeting or by mimicking patient-specific alleles, mouse models for xeroderma pigmentosum (XP), Cockayne syndrome (CS) and photosensitive trichothiodystrophy (TTD) have been obtained. The generation of this series of mouse mutants allows in vivo investigation of some intriguing questions that have puzzled the field, such as the paradoxical absence of cancer development in TTD and CS despite their NER deficiencies, and the role of the ERCC1 gene in mitotic recombination and cross-link repair. Other interesting issues include the pathophysiology of the non-NER related clinical symptoms in TTD and CS patients and the proposed involvement of NER and transcription in the process of aging. This review will focus on data obtained thus far and discuss further utilization of the mouse mutants for unraveling some of the fascinating and medically relevant aspects associated with defects in NER and related processes.</description>
    </item> <item>
      <title>Mouse model for the DNA repair/basal transcription disorder Trichothiodystrophy reveals cancer predisposition. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3157/</link>
      <pubDate>1999-01-01T00:00:00Z</pubDate>
      <description>Patients with the nucleotide excision repair (NER) disorder xeroderma pigmentosum (XP) are highly predisposed to develop sunlight-induced skin cancer, in remarkable contrast to photosensitive NER-deficient trichothiodystrophy (TTD) patients carrying mutations in the same XPD gene. XPD encodes a helicase subunit of the dually functional DNA repair/basal transcription complex TFIIH. The pleiotropic disease phenotype is hypothesized to be, in part, derived from a repair defect causing UV sensitivity and, in part, from a subtle, viable basal transcription deficiency accounting for the cutaneous, developmental, and the typical brittle hair features of TTD. To understand the relationship between deficient NER and tumor susceptibility, we used a mouse model for TTD that mimics an XPD point mutation of a TTD patient in the mouse germline. Like the fibroblasts from the patient, mouse cells exhibit a partial NER defect, evident from the reduced UV-induced DNA repair synthesis (residual repair capacity approximately 25%), limited recovery of RNA synthesis after UV exposure, and a relatively mild hypersensitivity to cell killing by UV or 7,12-dimethylbenz[a]anthracene. In accordance with the cellular studies, TTD mice exhibit a modestly increased sensitivity to UV-induced inflammation and hyperplasia of the skin. In striking contrast to the human syndrome, TTD mice manifest a dear susceptibility to UV- and 7,12-dimethylbenz[a]anthracene-induced skin carcinogenesis, albeit not as pronounced as the totally NER-deficient XPA mice. These findings open up the possibility that TTD is associated with a so far unnoticed cancer predisposition and support the notion that a NER deficiency enhances cancer susceptibility. These findings have important implications for the etiology of the human disorder and for the impact of NER on carcinogenesis.</description>
    </item> <item>
      <title>Mouse model for the DNA repair/basal transcription disorder trichothiodystrophy reveals cancer predisposition (Article)</title>
      <link>http://repub.eur.nl/res/pub/9138/</link>
      <pubDate>1999-01-01T00:00:00Z</pubDate>
      <description>Patients with the nucleotide excision repair (NER) disorder xeroderma
      pigmentosum (XP) are highly predisposed to develop sunlight-induced skin
      cancer, in remarkable contrast to photosensitive NER-deficient
      trichothiodystrophy (TTD) patients carrying mutations in the same XPD
      gene. XPD encodes a helicase subunit of the dually functional DNA
      repair/basal transcription complex TFIIH. The pleiotropic disease
      phenotype is hypothesized to be, in part, derived from a repair defect
      causing UV sensitivity and, in part, from a subtle, viable basal
      transcription deficiency accounting for the cutaneous, developmental, and
      the typical brittle hair features of TTD. To understand the relationship
      between deficient NER and tumor susceptibility, we used a mouse model for
      TTD that mimics an XPD point mutation of a TTD patient in the mouse
      germline. Like the fibroblasts from the patient, mouse cells exhibit a
      partial NER defect, evident from the reduced UV-induced DNA repair
      synthesis (residual repair capacity approximately 25%), limited recovery
      of RNA synthesis after UV exposure, and a relatively mild hypersensitivity
      to cell killing by UV or 7,12-dimethylbenz[a]anthracene. In accordance
      with the cellular studies, TTD mice exhibit a modestly increased
      sensitivity to UV-induced inflammation and hyperplasia of the skin. In
      striking contrast to the human syndrome, TTD mice manifest a dear
      susceptibility to UV- and 7,12-dimethylbenz[a]anthracene-induced skin
      carcinogenesis, albeit not as pronounced as the totally NER-deficient XPA
      mice. These findings open up the possibility that TTD is associated with a
      so far unnoticed cancer predisposition and support the notion that a NER
      deficiency enhances cancer susceptibility. These findings have important
      implications for the etiology of the human disorder and for the impact of
      NER on carcinogenesis.</description>
    </item> <item>
      <title>Disruption of the mouse XPD DNA repair/transcription gene results in preimplantation lethality. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3132/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>The xeroderma pigmentosum (XP) group D (XPD) gene encodes a DNA helicase that is a subunit of the transcription factor IIH complex, involved both in nucleotide excision repair of UV-induced DNA damage and in basal transcription initiation. Point mutations in the XPD gene lead either to the cancer-prone repair syndrome XP, sometimes in combination with a second repair condition; Cockayne syndrome; or the non-cancer-prone brittle-hair disorder trichothiodystrophy. To study the role of XPD in nucleotide excision repair and transcription and its implication in human disorders, we isolated the mouse XPD gene and generated a null allele via homologous recombination in embryonic stem cells by deleting XPD helicase domains IV-VI. Heterozygous cells and mice are normal without any obvious defect. However, when intercrossing heterozygotes, homozygous XPD mutant mice were selectively absent from the offspring. Furthermore, we could not detect XPD-/- embryos at day 7.5 of development. In vitro growth experiments with preimplantation-stage embryos obtained from heterozygous intercrosses showed a significantly higher fraction of embryos that died at the two-cell stage, compared to wild-type embryos. These results establish the essential function of the XPD protein in mammals and in cellular viability and are consistent with the notion that only subtle XPD mutations are found in XP, XP/Cockayne syndrome, and trichothiodystrophy patients.</description>
    </item> <item>
      <title>A mouse model for the basal transcription/DNA repair disorder trichothiodystrophy. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3141/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>The sun-sensitive form of the severe neurodevelopmental, brittle hair disorder trichothiodystrophy (TTD) is caused by point mutations in the essential XPB and XPD helicase subunits of the dual functional DNA repair/basal transcription factor TFIIH. The phenotype is hypothesized to be in part derived from a nucleotide excision repair defect and in part from a subtle basal transcription deficiency accounting for the nonrepair TTD features. Using a novel gene-targeting strategy, we have mimicked the causative XPD point mutation of a TTD patient in the mouse. TTD mice reflect to a remarkable extent the human disorder, including brittle hair, developmental abnormalities, reduced life span, UV sensitivity, and skin abnormalities. The cutaneous symptoms are associated with reduced transcription of a skin-specific gene strongly supporting the concept of TTD as a human disease due to inborn defects in basal transcription and DNA repair.</description>
    </item> <item>
      <title>Mammalian nucleotide excision repair and syndromes. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3124/</link>
      <pubDate>1997-01-01T00:00:00Z</pubDate>
      <description></description>
    </item>
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