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    <title>Groot, R. de</title>
    <link>http://repub.eur.nl/res/aut/586/</link>
    <description>List of Publications</description>
    <language>en</language>
    <image>
      <url>http://repub.eur.nl/static-eur/img/logo.png</url>
      <title>RePub, Erasmus University Rotterdam</title>
      <link>http://repub.eur.nl</link>
    </image>
    <item>
      <title>Chlamydia trachomatis infection during pregnancy associated with preterm delivery: A population-based prospective cohort study (Article)</title>
      <link>http://repub.eur.nl/res/pub/25130/</link>
      <pubDate>2011-06-01T00:00:00Z</pubDate>
      <description>Chlamydia trachomatis infection is the most prevalent bacterial sexually transmitted infection and may influence pregnancy outcome. This study was conducted to assess the effect of chlamydial infection during pregnancy on premature delivery and birthweight. Pregnant women attending a participating midwifery practice or antenatal clinic between February 2003 and January 2005 were eligible for the study. From 4,055 women self-administered questionnaires and urine samples, tested by PCR, were analysed for C. trachomatis infection. Pregnancy outcomes were obtained from midwives and hospital registries. Gestational ages and birthweights were analysed for 3,913 newborns. The C. trachomatis prevalence was 3.9%, but varied by age and socio-economic background. Chlamydial infection was, after adjustment for potential confounders, associated with preterm delivery before 32 weeks (OR 4.35 [95% CI 1.3, 15.2]) and 35 weeks gestation (OR 2.66 [95% CI 1.1, 6.5]), but not with low birthweight. Of all deliveries before 32 weeks and 35 weeks gestation 14.9% [95% CI 4.5, 39.5] and 7.4% [95% CI 2.5, 20.1] was attributable to C. trachomatis infection. Chlamydia trachomatis infection contributes significantly to early premature delivery and should be considered a public health problem, especially in young women and others at increased risk of C. trachomatis infection. </description>
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      <title>Chlamydia trachomatis and placental inflammation in early preterm delivery (Article)</title>
      <link>http://repub.eur.nl/res/pub/25491/</link>
      <pubDate>2011-05-01T00:00:00Z</pubDate>
      <description>Chlamydia trachomatis may infect the placenta and subsequently lead to preterm delivery. Our aim was to evaluate the relationship between the presence of Chlamydia trachomatis and signs of placental inflammation in women who delivered at 32 weeks gestation or less. Setting: placental histology and clinical data were prospectively obtained from 304 women and newborns at the Erasmus MC-Sophia, Rotterdam, the Netherlands. C. trachomatis testing of placentas was done retrospectively using PCR. C. trachomatis was detected in 76 (25%) placentas. Histological evidence of placental inflammation was present in 123 (40%) placentas: in 41/76 (54%) placentas with C. trachomatis versus 82/228 (36%) placentas without C. trachomatis infection (OR 2.1, 95% CI 1.2-3.5). C. trachomatis infection correlated with the progression (P = 0.009) and intensity (P = 0.007) of materno-fetal placental inflammation. C. trachomatis DNA was frequently detected in the placenta of women with early preterm delivery, and was associated with histopathological signs of placental inflammation. </description>
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      <title>Risk factors for otitis media in children with special emphasis on the role of colonization with bacterial airway pathogens: The Generation R study (Article)</title>
      <link>http://repub.eur.nl/res/pub/23761/</link>
      <pubDate>2011-01-01T00:00:00Z</pubDate>
      <description>Acute otitis media is the most frequent diagnosis in children visiting physicians' offices. Risk factors for otitis media have been widely studied. Yet, the correlation between bacterial carriage and the development of otitis media is not entirely clear. Our aim was to study in a population-based prospective cohort the risk factors for otitis media in the second year of life with special emphasis on the role of colonization with Streptococcus pneumoniae, Haemophilus influenzae and Moraxella catarrhalis. The study was embedded in the Generation R Study. Data on risk factors and doctor-diagnosed otitis media were obtained by midwives, hospital registries and postal questionnaires in the whole cohort (n = 7,295). Nasopharyngeal swabs were obtained at the age of 1.5, 6 and 14 months in the focus cohort (n = 1,079). Of these children, 2,515 (47.2%) suffered at least one period of otitis media in their second year of life. The occurrence of otitis media during the follow-up period in the first 6 months of life and between 6 and 12 months of age was associated with the risk of otitis media in the second year of life (aOR, 1.83 95% CI 1.24-2.71 and aOR 2.72, 95% CI 2.18-3.38, respectively). Having siblings was associated with an increased risk for otitis media in the second year of life (aOR 1.42, 95% CI 1.13-1.79). No associations were found between bacterial carriage in the first year of life and otitis media in the second year of life. In our study, otitis media in the first year of life is an independent risk factor for otitis media in the second year of life. Surprisingly, bacterial carriage in the first year of life did not add to this risk. Moreover, no association was observed between bacterial carriage in the first year of life and otitis in the second year of life.</description>
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      <title>Coagulase-negative staphylococcal skin carriage among neonatal intensive care unit personnel: From population to infection (Article)</title>
      <link>http://repub.eur.nl/res/pub/21615/</link>
      <pubDate>2010-11-01T00:00:00Z</pubDate>
      <description>Coagulase-negative staphylococci (CoNS) are a major cause of sepsis in neonatal intensive care units (NICU) worldwide. Infecting strains of these commensal bacteria may originate from NICU personnel. Therefore, we studied the characteristics of CoNS isolates from NICU personnel and compared them to those of isolates from the general population and from sepsis patients. Furthermore, we studied the epidemiological effect on CoNS carriage of NICU personnel after a period of absence. In our study, we isolated CoNS from the thumbs of NICU personnel every 2 weeks during the summer of 2005 and sampled personnel returning from vacation and a control group from the general population. Furthermore, we collected sepsis isolates from this period. Isolates were tested for antibiotic resistance, mecA and icaA carriage, biofilm production, and genetic relatedness. We found that mecA and icaA carriage as well as penicillin, oxacillin, and gentamicin resistance were significantly more prevalent in CoNS strains from NICU personnel than in community isolates. Similar trends were observed when postvacation strains were compared to prevacation strains. Furthermore, genetic analysis showed that 90% of the blood isolates were closely related to strains found on the hands of NICU personnel. Our findings revealed that CoNS carried by NICU personnel differ from those in the general population. Hospital strains are replaced by community CoNS after a period of absence. NICU personnel are a likely cause for the cross-contamination of virulent CoNS that originate from the NICU to patients.</description>
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      <title>Genome-wide association study identifies variants in the CFH region associated with host susceptibility to meningococcal disease. (Article)</title>
      <link>http://repub.eur.nl/res/pub/28361/</link>
      <pubDate>2010-09-01T00:00:00Z</pubDate>
      <description>Meningococcal disease is an infection caused by Neisseria meningitidis. Genetic factors contribute to host susceptibility and progression to disease, but the genes responsible for disease development are largely unknown. We report here a genome-wide association study for host susceptibility to meningococcal disease using 475 individuals with meningococcal disease (cases) and 4,703 population controls from the UK. We performed, in Western European and South European cohorts (consisting of 968 cases and 1,376 controls), two replication studies for the most significant SNPs. A cluster of complement factor SNPs replicated independently in both cohorts, including SNPs within complement factor H (CFH) (rs1065489 (p.936D&lt;E), P = 2.2 x 10(-11)) and in CFH-related protein 3 (CFHR3)(rs426736, P = 4.6 x 10(-13)). N. meningitidis is known to evade complement-mediated killing by the binding of host CFH to the meningococcal factor H-binding protein (fHbp). Our study suggests that host genetic variation in these regulators of complement activation plays a role in determining the occurrence of invasive disease versus asymptomatic colonization by this pathogen.</description>
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      <title>Ultra-fast analysis of plasma and intracellular levels of HIV protease inhibitors in children: A clinical application of MALDI mass spectrometry (Article)</title>
      <link>http://repub.eur.nl/res/pub/21030/</link>
      <pubDate>2010-08-13T00:00:00Z</pubDate>
      <description>HIV protease inhibitors must penetrate into cells to exert their action. Differences in the intracellular pharmacokinetics of these drugs may explain why some patients fail on therapy or suffer from drug toxicity. Yet, there is no information available on the intracellular levels of HIV protease inhibitors in HIV infected children, which is in part due to the large amount of sample that is normally required to measure the intracellular concentrations of these drugs. Therefore, we developed an ultra-fast and sensitive assay to measure the intracellular concentrations of HIV protease inhibitors in small amounts of peripheral blood mononuclear cells (PBMCs), and determined the intracellular concentrations of lopinavir and ritonavir in HIV infected children. An assay based on matrix-assisted laser desorption/ionization (MALDI) - triple quadrupole mass spectrometry was developed to determine the concentrations of HIV protease inhibitors in 10 μL plasma and 1 × 106  PBMCs. Precisions and accuracies were within the values set by the FDA for bioanalytical method validation. Lopinavir and ritonavir did not accumulate in PBMCs of HIV infected children. In addition, the intracellular concentrations of lopinavir and ritonavir correlated poorly to the plasma concentrations ofthese drugs. MALDI-triple quadrupole mass spectrometry is a new tool for ultra-fast and sensitive determination of drug concentrations which can be used, for example, to assess the intracellular pharmacokinetics of HIV protease inhibitors in HIV infected children.</description>
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      <title>Passive immunisation against respiratory syncytial virus: A cost-effectiveness analysis (Article)</title>
      <link>http://repub.eur.nl/res/pub/27563/</link>
      <pubDate>2010-07-01T00:00:00Z</pubDate>
      <description>Aim: The cost-effectiveness of passive immunisation against respiratory syncytial virus (RSV) in the Netherlands was studied by assessing incremental costs to prevent one hospitalisation in high-risk children using a novel individualised monthly approach. Methods: Cost-effectiveness analysis was performed by combining estimates of individual hospitalisation costs and monthly hospitalisation risks, with immunisation costs, parental costs and efficacy of passive immunisation for a reference case with the highest hospitalisation risks and costs of hospitalisation during the RSV season (male, gestational age ≤28 weeks, birth weight ≤2500 g, having bronchopulmonary dysplasia (BPD), aged 0 months at the beginning of the season (October)). Various sensitivity analyses and a cost-neutrality analysis were performed. Results: Cost-effectiveness of passive immunisation varied widely by child characteristics and seasonal month. For the reference case it was most cost effective in December at €13 190 per hospitalisation averted. Cost-effectiveness was most sensitive to changes in hospitalisation risk. For the reference case, cost neutrality was reached in December, if acquisition costs of passive immunisation decreased from €930 to €375, monthly hospitalisation risk increased from 7.6% to 17%, or hospitalisation costs increased from €10 250 to €23 250 per hospitalisation. Even if passive immunisation prevented all hospitalisations, costs per hospitalisation averted in December would still exceed €2645. Conclusions: Although cost-effectiveness of passive immunisation varied strongly by child characteristics and seasonal month, incremental costs per hospitalisation averted were always high. A restrictive immunisation policy only immunising children with BPD in high-risk months is therefore recommended. The costs of passive immunisation would have to be considerably reduced to achieve cost-effectiveness.</description>
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      <title>Reduced ADAMTS13 in children with severe meningococcal sepsis is associated with severity and outcome (Article)</title>
      <link>http://repub.eur.nl/res/pub/33006/</link>
      <pubDate>2010-06-01T00:00:00Z</pubDate>
      <description>Multiple organ failure is a common feature of pediatric meningococcal sepsis and is associated with an imbalance of coagulation and fibrinolysis. This is partly due to an increased secretion of prothrombotic ultralarge von Willebrand factor (VWF) as the result of vascular endothelial damage. Another factor that may contribute is ADAMTS13, which converts VWF into smaller, less active, VWF multimers and thus influences VWF activity in plasma. We investigated the role of ADAMTS13 and VWF in the severity and outcome of sepsis. In 58 children with severe meningococcal sepsis we measured ADAMTS13 activity and antigen, VWF collagen binding activity (VWF:CB) and antigen levels (VWF:Ag), VWF propeptide and factor VIII at different time points during their stay in the paediatric intensive care unit. In the acute phase, both ADAMTS13 activity and antigen were decreased (median 23.4% and 33.7% of normal, respectively) and VWF:CB and VWF:Ag levels were strongly increased (325% and 348%, respectively.) ADAMTS13 antigen (23.9% vs. 34.6%; p=0.06) and VWF:CB (240% and 340% p&lt;0.001) were lower in non-survivors than in survivors. ADAMTS13 activity and VWF:CB were both correlated with the severity of the disease, as indicated by the Pediatric Risk of Mortality score (Rs= -0.38 and Rs= -0.50, p=0.01, respectively, p&lt;0.001). In the acute phase of severe sepsis decreased levels of ADAMTS13 and increased levels of VWF are observed, and the changes are related to severity of disease and outcome. This may contribute to the formation of microthrombi and the severity of thrombotic sequelae of sepsis. </description>
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      <title>Meropenem pharmacokinetics in the newborn (Article)</title>
      <link>http://repub.eur.nl/res/pub/25230/</link>
      <pubDate>2009-09-21T00:00:00Z</pubDate>
      <description>We studied meropenem in 23 pre-term (gestational age, 29 to 36 weeks) and 15 full-term (gestational age, 37 to 42 weeks) neonates. Meropenem doses of 10, 20, and 40 mg/kg were administered as single doses (30-min intravenous infusion) on a random basis. Blood was obtained for determining the meropenem concentration nine times. Each child required other antimicrobials for proven/suspected bacterial infections. Samples were assayed by high-performance liquid chromatography analysis. Population pharmacokinetic parameter values were obtained by employing the BigNPAG program. Model building was performed by the likelihood ratio test. The final model included estimated creatinine clearance (CLcr) (Schwartz formula) and weight (Wt) in the calculation of clearance (meropenem clearance = 0.00112 x CLcr+ 0.0925 x Wt + 0.156 liter/hr). The overall fit of the model to the data was good (observed = 1.037 x predicted - 0.096; r2= 0.977). Given the distributions of estimated creatinine clearance and weight between pre-term and full-term neonates, meropenem clearance was substantially higher in the full-term group. A Monte Carlo simulation was performed using the creatinine clearance and weight distributions for pre-term and full-term populations separately, examining 20- and 40-mg/kg doses, 8- and 12-h dosing intervals, and 0.5-h and 4-h infusion times. The 8-h interval produced robust target attainments (both populations). If more resistant organisms were to be treated (MIC of 4 to 8 mg/liter), the 40-mg/kg dose and a prolonged infusion was favored. Treating clinicians need to balance dose choices for optimizing target attainment against potential toxicity. These findings require validation in clinical circumstances. Copyright </description>
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      <title>Chlamydia trachomatis respiratory infection in Dutch infants (Article)</title>
      <link>http://repub.eur.nl/res/pub/24874/</link>
      <pubDate>2009-09-01T00:00:00Z</pubDate>
      <description>Chlamydia trachomatis is the most common bacterial pathogen causing sexually transmitted infections in Dutch adults. As prenatal screening for C trachomatis and treatment of pregnant women is not routine practice in The Netherlands, perinatal transmission of C trachomatis may therefore occur. The presence of C trachomatis in infants less than 6 months of age who presented with respiratory complaints to the Erasmus MC-Sophia hospital was evaluated. Respiratory specimens, primarily nasopharyngeal swabs, were tested for C trachomatis, respiratory viruses and Mycoplasma pneumoniae using PCR, viral isolation in cell cultures and direct immunofluorescence. C trachomatis respiratory tract infection was confirmed to be relatively common with detection in 10 of 148 (7%) infants tested. C trachomatis had not been tested for by the attending physicians, but was the second most frequently detected respiratory pathogen after human Respiratory Syncitial Virus, which was found in 41 (28%) infants.</description>
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      <title>Strain-specific impact of PsaR of Streptococcus pneumoniae on global gene expression and virulence (Article)</title>
      <link>http://repub.eur.nl/res/pub/25217/</link>
      <pubDate>2009-08-10T00:00:00Z</pubDate>
      <description>Previous studies have indicated that PsaR of Streptococcus pneumoniae is a manganese-dependent regulator, negatively affecting the expression of at least seven genes. Here, we extended these observations by transcriptome and proteome analysis of psaR mutants in strains D39 and TIGR4. The microarray analysis identified three shared PsaR targets: the psa operon, pcpA and prtA. In addition, we found 31 genes to be regulated by PsaR in D39 only, most strikingly a cellobiose-specific phosphotransferase system (PTS) and a putative bacteriocin operon (sp0142-sp0146). In TIGR4, 14 PsaR gene targets were detected, with the rlrA pathogenicity islet being the most pronounced. Proteomics confirmed most of the shared gene targets. To examine the contribution of PsaR to pneumococcal virulence, we compared D39 and TIGR4 wild-type (wt) and psaR mutants in three murine infection models. During colonization, no clear effect was observed of the psaR mutation in either D39 or TIGR4. In the pneumonia model, small but significant differences were observed in the lungs of mice infected with either D39wt or ΔpsaR: Δ39ΔpsaR had an initial advantage in survival in the lungs. Conversely, TIGR4ΔpsaR-infected mice had significantly lower bacterial loads at 24 h only. Finally, during experimental bacteraemia, Δ39ΔpsaR-infected mice had significantly lower bacterial loads in the bloodstream than wt-infected mice for the first 24 h of infection. TIGR4ΔpsaR showed attenuation at 36 h only. In conclusion, our results show that PsaR of D39 and TIGR4 has a strain-specific role in global gene expression and in the development of bacteraemia in mice. </description>
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      <title>Factors Associated with Pneumococcal Carriage in Healthy Dutch Infants: The Generation R Study (Article)</title>
      <link>http://repub.eur.nl/res/pub/14113/</link>
      <pubDate>2008-12-01T00:00:00Z</pubDate>
      <description>Objective: To study the prevalence, risk factors, and dynamics of pneumococcal carriage in infancy. Study design: In a population-based prospective cohort study conducted in Rotterdam, the Netherlands between June 2003 and November 2006, nasopharyngeal swabs were obtained from children at age of 1.5, 6, and 14 months. Data on risk factors were obtained from midwives, hospital registries, and questionnaires. Results: The prevalence of pneumococcal carriage increased from 8.3% at age 1.5 months (n = 627) to 31.3% at age 6 months (n = 832) and 44.5% at age 14 months (n = 757). The prevalence of serotypes covered by the 7-valent conjugate increased from 3.0% to 16.2% and 27.7% at these respective ages. Having siblings (adjusted odds ratio [aOR] = 4.33; 95% confidence interval [CI] = 1.22 to 15.35) and day care attendance (aOR = 3.05, 95% CI = 1.88 to 4.95 at 6 months; aOR = 2.78, 95% CI 1.= 70 to 4.55 at 14 months) were associated with pneumococcal carriage. Pneumococcal carriage at age 6 months was associated with pneumococcal carriage at age 14 months (aOR = 2.43; 95% CI = 1.50 to 3.94). Pneumococcal carriage was not associated with sex, maternal smoking, maternal educational level, or breast-feeding. Conclusions: The prevalence of serotypes covered by the 7-valent conjugate vaccine increased in the first year of life. Siblings, day care attendance, and previous pneumococcal carriage were independent factors associated with pneumococcal carriage.</description>
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      <title>Simultaneous determination of endogenous deoxynucleotides and phosphorylated nucleoside reverse transcriptase inhibitors in peripheral blood mononuclear cells using ion-pair liquid chromatography coupled to mass spectrometry (Article)</title>
      <link>http://repub.eur.nl/res/pub/30525/</link>
      <pubDate>2008-12-01T00:00:00Z</pubDate>
      <description>Nucleoside reverse transcriptase inhibitors (NRTIs) are activated intracellularly to their triphosphate (TP) form, which compete with endogenous deoxynucleotide-triphosphates (dNTP) as substrate for HIV reverse transcriptase. The activity of NRTIs is thus described by the NRTI-TP to-dNTP ratio in relevant cell types. Therefore, we developed an ion-pair (IP) LC-MS method for the simultaneous analysis of the mono-, di-, and TP forms of NRTIs and endogenous deoxynucleosides in peripheral blood mononuclear cells (PBMC). The IP-LC method was applied on an ITmass spectrometer using the MS-mode as well as on a triple quadrupole mass spectrometer using the MS/MS mode. The MS/MS approach on the triple quadrupole mass spectrometer demonstrated the best clinical applicability due to its higher sensitivity. The LOD (minimum amount on column) were 25 fmol for the TP forms of zidovudine, lamivudine, and stavudine, as well as for their endogenous dNTP counterparts. The linearity (R2) of the calibration curves were&gt;0.99. The obtained LOD readily allow for clinical applications using just one million PBMC obtained from HIV-infected patients under therapy. </description>
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      <title>Cost-effectiveness estimates for antenatal HIV testing in the Netherlands (Article)</title>
      <link>http://repub.eur.nl/res/pub/30015/</link>
      <pubDate>2008-10-01T00:00:00Z</pubDate>
      <description>This paper provides an estimation of the lifetime health-care cost of HIV-infected children and an update of the cost-effectiveness of universal HIV-screening of pregnant women in Amsterdam (The Netherlands). During 2003-2005, we collected data concerning the prevalence of newly diagnosed HIV-infected pregnant women in Amsterdam. Also, data on resource utilization and HAART regimen for HIV-infected children was gathered from a national registry. Using Kaplan-Meier survival analysis, we estimated the life-expectancy of a vertically HIV-infected child at 19 years, with the corresponding lifetime health-care costs of €179,974. HIV-screening of pregnant women could prevent 2.4 HIV transmissions annually in Amsterdam, based on an estimated prevalence of nine yet undiagnosed HIV-positive pregnant women per 10,000 pregnancies. We show that universal HIV screening during pregnancy generates significant net cost savings and health benefits in most situations. Universal antenatal HIV screening is justified in Amsterdam from a health-economic point of view.</description>
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      <title>Quantitative analysis of antiretroviral drugs in lysates of peripheral blood mononuclear cells using MALDI-triple quadrupole mass spectrometry (Article)</title>
      <link>http://repub.eur.nl/res/pub/33103/</link>
      <pubDate>2008-07-01T00:00:00Z</pubDate>
      <description>We report here on the use of a prototype matrix-assisted laser desorption/ionization (MALDI)-triple quadrupole mass spectrometer for quantitative analysis of six anti-retroviral drugs in lysates of peripheral blood mononuclear cells (PBMC). Of the five investigated MALDI matrixes, 2,5-dihydroxybenzoic acid (DHB) and the novel 7-hydroxy-4-(trifluoromethyl) coumarin (HFMC) showed the broadest application ranges for the antiretroviral drugs. For DHB, the mean relative errors ranged from 8.3 (ritonavir) to 4.3% (saquinavir). The mean precisions (CV) ranged from 17.3 (nevirapine) to 10.8% (saquinavir). The obtained lower limits of quantitation (LLOQ) readily allow clinical applications using just 1 million PBMC from HIV-infected patients under therapy. The new matrix HFMC was used for quantitative analysis of the HIV protease inhibitor indinavir using a stainless steel target plate as well as a target plate with a novel, strongly hydrophobic fluoropolymer coating. Using the coated target plate, the mean relative error improved from 10.1 to 4.6%, the mean precision from 33.9 to 9.9% CV, and the LLOQ from 16 to 1 fmol. In addition, the measurement time for one spot went down from 6 to only 2.5 s. </description>
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      <title>Quantitative analysis of HIV-1 protease inhibitors in cell lysates using MALDI-FTICR mass spectrometry (Article)</title>
      <link>http://repub.eur.nl/res/pub/32318/</link>
      <pubDate>2008-05-15T00:00:00Z</pubDate>
      <description>In this report we explore the use of MALDI-FTICR mass spectrometry for the quantitative analysis of five HIV-1 protease inhibitors in cell lysates. 2,5-Dihydroxybenzoic acid (DHB) was used as the matrix. From a quantitative perspective, DHB is usually a poor matrix due to its poor shot-to-shot and poor spot-to-spot reproducibilities. We found that the quantitative precisions improved significantly when DMSO (dimethylsulfoxide) was added to the matrix solution. For lopinavir and ritonavir, currently the most frequently prescribed HIV-1 protease inhibitors, the signal-to-noise ratios improved significantly when potassium iodide was added to the matrix solution. The mean quantitative precisions, expressed as % relative standard deviation, were 6.4% for saquinavir, 7.3% for lopinavir, 8.5% for ritonavir, 11.1% for indinavir, and 7.2% for nelfinavir. The mean quantitative accuracies, expressed as % deviation, were 4.5% for saquinavir, 6.0% for lopinavir, 5.9% for ritonavir, 6.6% for indinavir, and 8.0% for nelfinavir. The concentrations measured for the individual quality control samples were all within 85-117% of the theoretical concentrations. The lower limits of quantification in cell lysates were 4 fmol/μL for saquinavir, 16 fmol/μL for lopinavir, 31 fmol/μL for ritonavir, and 100 fmol/μL for indinavir and nelfinavir. The mean mass accuracies for the protease inhibitors were ≤ 0.28 ppm using external calibration. Our results show that MALDI-FTICR mass spectrometry can be successfully used for precise, accurate, and selective quantitative analyses of HIV-1 protease inhibitors in cell lysates. In addition, the lower limits of quantification obtained allow clinical applications of the technique. </description>
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      <title>Site-specific contributions of glutamine-dependent regulator GlnR and GlnR-regulated genes to virulence of Streptococcus pneumoniae (Article)</title>
      <link>http://repub.eur.nl/res/pub/28952/</link>
      <pubDate>2008-03-01T00:00:00Z</pubDate>
      <description>The transcriptional regulator GlnR of Streptococcus pneumoniae is involved in the regulation of glutamine and glutamate metabolism, controlling the expression of the glnRA and glnPQ-zwf operons, as well as the gdhA gene. To assess the contribution of the GlnR regulon to virulence, D39 wild-type and mutant strains lacking genes of this regulon were tested in an in vitro adherence assay and murine infection models. All of the mutants, except the △glnR mutant, were attenuated in adherence to human pharyngeal epithelial Detroit 562 cells, suggesting a contribution of these genes to adherence during the colonization of humans. During murine colonization, only the △glnA mutant and the glnP-glnA double mutant (△glnAP) were attenuated, in contrast to △glnP, indicating that the effect is caused by the lack of GlnA expression. In our pneumonia model, only △glnP and △glnAP showed a significantly reduced number of bacteria in the lungs and blood, indicating that GlnP is required for survival in the lungs and possibly for dissemination to the blood. In intravenously infected mice, glnP and glnA were individually dispensable for survival in the blood whereas the △glnAP mutant was avirulent. Finally, transcriptome analysis of the △glnAP mutant showed that many genes involved in amino acid metabolism were upregulated. This signifies the importance of glutamine/glutamate uptake and synthesis for full bacterial fitness and virulence. In conclusion, several genes of the GlnR regulon are required at different sites during pathogenesis, with glnA contributing to colonization and survival in the blood and glnP important for survival in the lungs and, possibly, efficient transition from the lungs to the blood. Copyright </description>
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      <title>Chlamydia trachomatis as a cause of neonatal conjunctivitis in Dutch infants (Article)</title>
      <link>http://repub.eur.nl/res/pub/28966/</link>
      <pubDate>2008-02-01T00:00:00Z</pubDate>
      <description>BACKGROUND. Chlamydia trachomatis is the most common sexually transmitted pathogen in adults, which at delivery may be transmitted from mother to child and cause conjunctivitis and pneumonia. In the Netherlands, prenatal chlamydial screening and treatment of pregnant women is not routine practice. The contribution of C trachomatis to neonatal ophthalmic disease has not been studied in the Netherlands and remains unclear. METHODS. At the Sophia Children's Hospital and Rotterdam Eye Hospital, 2 cohorts of infants &lt;3 months of age presenting with conjunctivitis were studied, 1 retrospectively (July 1996 to July 2001) and 1 prospectively (September 2001 to September 2002). Laboratory diagnosis was based on bacterial culture and polymerase chain reaction for C trachomatis. RESULTS. C trachomatis was detected in 27 (64%) of 42 retrospectively studied infants and 14 (61%) of 23 prospectively studied infants. Mucopurulent discharge was present in 35 (95%) of 37, swelling of the eyes in 27 (73%) of 37, conjunctival erythema in 24 (65%) of 37, respiratory symptoms in 14 (38%) of 37, and feeding problems in 5 (14%) of 37 infants respectively. Before microbiological diagnosis, general practitioners prescribed antichlamydial antibiotics locally to 5 (12%) of 41 and systemically to 4 (10%) of 41 infants who tested positive for chlamydia, and ophthalmologists prescribed to 21 (51%) of 41 and 7 (17%) of 41, respectively. CONCLUSIONS. C trachomatis was the major cause of bacterial conjunctivitis in this population. Clinically, differentiation from other pathogens was not possible. Many infants who tested positive for chlamydia did not receive appropriate antibiotic treatment. Copyright </description>
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      <title>CodY of Streptococcus pneumoniae: Link between nutritional gene regulation and colonization (Article)</title>
      <link>http://repub.eur.nl/res/pub/29095/</link>
      <pubDate>2008-01-01T00:00:00Z</pubDate>
      <description>CodY is a nutritional regulator mainly involved in amino acid metabolism. It has been extensively studied in Bacillus subtilis and Lactococcus lactis. We investigated the role of CodY in gene regulation and virulence of the human pathogen Streptococcus pneumoniae. We constructed a codY mutant and examined the effect on gene and protein expression by microarray and two-dimensional differential gel electrophoresis analysis. The pneumococcal CodY regulon was found to consist predominantly of genes involved in amino acid metabolism but also several other cellular processes, such as carbon metabolism and iron uptake. By means of electrophoretic mobility shift assays and DNA footprinting, we showed that most of the targets identified are under the direct control of CodY. By mutating DNA predicted to represent the CodY box based on the L. lactis consensus, we demonstrated that this sequence is indeed required for in vitro DNA binding to target promoters. Similar to L. lactis, DNA binding of CodY was enhanced in the presence of branched-chain amino acids, but not by GTP. We observed in experimental mouse models that codY is transcribed in the murine nasopharynx and lungs and is specifically required for colonization. This finding was underscored by the diminished ability of the codY mutant to adhere to nasopharyngeal cells in vitro. Furthermore, we found that pcpA, activated by CodY, is required for adherence to nasopharyngeal cells, suggesting a direct link between nutritional regulation and adherence. In conclusion, pneumococcal CodY predominantly regulates genes involved in amino acid metabolism and contributes to the early stages of infection, i.e., colonization of the nasopharynx. Copyright </description>
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      <title>Improved survival of children with sepsis and purpura: Effects of age, gender, and era (Article)</title>
      <link>http://repub.eur.nl/res/pub/36762/</link>
      <pubDate>2007-10-18T00:00:00Z</pubDate>
      <description>Background: To gain insight into factors that might affect results of future case-control studies, we performed an analysis of children with sepsis and purpura admitted to the paediatric intensive care unit (PICU) of Erasmus MC-Sophia Children's Hospital (Rotterdam, The Netherlands). Methods: Between 1988 and 2006, all 287 children consecutively admitted with sepsis and purpura were included in various sepsis studies. Data regarding age, gender, ethnicity, serogroup of Neisseria meningitidis, severity, therapy, and survival were collected prospectively. These data were pooled into one database and analyzed retrospectively. Results: The case fatality rate (CFR) from sepsis and purpura was 15.7%. During the study period, survival improved significantly. Younger age was significantly associated with more severe disease and a higher CFR. Children under the median age of 3.0 years had an increased risk of case fatality (odds ratio 4.3, 95% confidence interval 2.1 to 9.2; p &lt; 0.001). Gender was not associated with CFR. However, males did have higher Paediatric Risk of Mortality scores, fewer PICU-free days, and more presence of shock. The course of sepsis and purpura was not related to ethnic origin. A causative organism was isolated in 84.3% of cases. N. meningitidis was the major organism (97.5%). Although N. meningitidis serogroup B was observed more often in younger children, serogroups were not associated with severity or survival. During the study period, the use of inotropic agents and corticosteroids changed substantially (less dopamine and more dobutamine, norepinephrine, and corticosteroids). Conclusion: Age and gender are determinants of severity of paediatric sepsis and purpura. Survival rates have improved during the last two decades. </description>
    </item> <item>
      <title>Genetic polymorphisms in immunoresponse genes TNFA, IL6, IL10, and TLR4 are associated with recurrent acute otitis media (Article)</title>
      <link>http://repub.eur.nl/res/pub/35154/</link>
      <pubDate>2007-10-01T00:00:00Z</pubDate>
      <description>OBJECTIVE. Cytokines and other inflammatory mediators are involved in the pathogenesis of otitis media. We hypothesized that polymorphisms in inflammatory response genes contribute to the increased susceptibility to acute otitis media in otitis-prone children. PATIENTS AND METHODS. DNA samples from 348 children with ≥2 acute otitis media episodes, who were participating in a randomized, controlled vaccination trial, and 463 healthy adult controls were included. Polymorphisms in TNFA, IL1B, IL4, IL6, IL10, IL8, NOS2A, C1INH, PARP, TLR2, and TLR4 were genotyped. Genotype distributions in children with recurrent acute otitis media were compared with those in controls. Within the patient group, the number of acute otitis media episodes before vaccination and the clinical and immunologic response to pneumococcal conjugate vaccinations were analyzed. RESULTS. The IL6-174 G/G genotype was overrepresented in children with acute otitis media when compared with controls. In the patient group, TNFA promoter genotypes -238 G/G and -376 G/G and the TLR4 299 A/A genotype were associated with an otitis-prone condition. Furthermore, lower specific anticapsular antibody production after complete vaccination was observed in patients with the TNFA-238 G/G genotype or TNFA-863 A allele carriage. Finally, the IL10-1082 A/A genotype contributed to protection from the recurrence of acute otitis media after pneumococcal vaccination. CONCLUSIONS. Variation in innate immunoresponse genes such as TNFA-863A, TNFA-376G, TNFA-238G, IL10-1082 A, and IL6-174G alleles in the promoter sequences may result in altered cytokine production that leads to altered inflammatory responses and, hence, contributes to an otitis-prone condition. Copyright </description>
    </item> <item>
      <title>The use of health economics to guide drug development decisions: Determining optimal values for an RSV-vaccine in a model-based scenario-analytic approach (Article)</title>
      <link>http://repub.eur.nl/res/pub/35905/</link>
      <pubDate>2007-09-28T00:00:00Z</pubDate>
      <description>Health-economic modelling is useful for assessing the clinical requirements and impact of new vaccines. In this study, we estimate the impact of potential vaccination for respiratory syncytial virus (RSV) of infants in the Netherlands. A decision analysis model was employed using seasonal data from a cohort of children (1996-1997 through 1999-2000) to assess hospitalisation, costs and impact of vaccination. Yearly, an estimated 3670 infants are hospitalised with RSV-infection in the Netherlands, vaccination protecting infants from 3 months of life onwards could prevent approximately 1000-3000 hospitalisations, depending on the effectiveness of the potential vaccine. Additionally, vaccination could prevent a major share of RSV-related costs. Comparison of the calculated break-even prices with the average price of recently introduced vaccines indicates that pricing for a potential RSV-vaccine most likely allows for only a single dose vaccination or several doses at a relatively low price per dose in order to achieve cost savings. However, if evidence on relevant RSV-related mortality would become available, higher pricing would be justified, while still remaining below accepted thresholds for cost-effectiveness. </description>
    </item> <item>
      <title>Two patients with complete defects in interferon gamma receptor-dependent signaling (Article)</title>
      <link>http://repub.eur.nl/res/pub/35908/</link>
      <pubDate>2007-09-01T00:00:00Z</pubDate>
      <description>Unusual susceptibility to mycobacterial infections can be caused by deleterious mutations in genes that encode the interferon-γ receptor 1 chain. Such mutations hamper the activation of macrophages by a type 1 immune response and result in enhanced survival of intracellular pathogens. We here report two patients with unusual mycobacterial infections, both diagnosed with homozygous deleterious interferon-γ receptor 1 gene mutations. Patient 1 became ill after Bacillus Calmette-Guérin vaccination at the age of 9 months and died at the age of 18 months. She carried a homozygous C71Y mutation in the extracellular part of the mature interferon-γ receptor 1 protein, resulting in the lack of detectable protein expression and absence of interferon-γ dependent signaling. Patient 2 became ill at the age of 3 years, is still alive at 19 years of age, and has suffered from five successive infection episodes with atypical mycobacteria. A homozygous splice-site mutation in intron 3 was identified, resulting in the deletion of exon 3 at the mRNA level and consequently a truncated interferon-γ receptor 1 protein with absence of the transmembrane domain. Protein expression and interferon-γ dependent signaling were not detectable. </description>
    </item> <item>
      <title>Association between nasal carriage of Staphylococcus aureus and the human complement cascade activator serine protease C1 inhibitor (C1INH) valine vs. methionine polymorphism at amino acid position 480 (Article)</title>
      <link>http://repub.eur.nl/res/pub/17749/</link>
      <pubDate>2007-08-01T00:00:00Z</pubDate>
      <description>Staphylococcus aureus produces compounds that interfere with complement deposition. We hypothesized that humans have developed countermeasures to staphylococcal complement evasion and we screened for single nucleotide polymorphisms in the serine protease C1 inhibitor (C1INH) gene at amino acid position 480 (valine vs. methionine) and nasal carriage of S. aureus. In our study cohort, 38 individuals were persistently colonized by S. aureus, whereas 50 were invariably culture-negative. A trend was observed towards an increased prevalence of the Val/Val genotype in noncarriers compared to persistent carriers (OR 0.50, P=0.07). The Val/Val genotype was significantly overrepresented in noncarriers compared to 463 Caucasian blood donors (OR 0.52, P=0.02). These findings suggest that susceptibility to S. aureus nasal carriage is associated with the C1INH V480M polymorphism</description>
    </item> <item>
      <title>The 4G/4G plasminogen activator inhibitor-1 genotype is associated with frequent recurrence of acute otitis media (Article)</title>
      <link>http://repub.eur.nl/res/pub/35267/</link>
      <pubDate>2007-08-01T00:00:00Z</pubDate>
      <description>OBJECTIVES. Plasminogen activator inhibitor-1 counterregulates cell migration, adhesion, and tissue repair. The PAI1 4G/5G promoter polymorphism has an effect on expression levels of PAI1. After a first acute otitis media episode, children are at increased risk for a next episode. Because the PAI1 4G allele is associated with higher plasminogen activator inhibitor-1 production and, hence, decreased tissue repair, we hypothesize that this allele may contribute to increased recurrence of acute otitis media. PATIENTS AND METHODS. The PAI1 4G/5G polymorphism was genotyped in 348 Dutch children aged 1 to 7 years who were suffering from recurrent acute otitis media and participating in a randomized, controlled trial and 463 healthy control subjects, representative of the general population. RESULTS. No significant difference in PAI1 genotype distribution between the whole acute otitis media group and control subjects was observed. However, children with the PAI1 4G/4G genotype had an increased risk of more frequent acute otitis media episodes compared with those who were homozygous for the 5G variant, also after correction for cofactors. This finding was attributable to children &lt;4 years of age. CONCLUSIONS. Our findings suggest that the PAI1 4G/4G genotype is associated with an increased risk for the otitis-prone condition, potentially because of impaired healing after a previous otitis media episode. Copyright </description>
    </item> <item>
      <title>Clinical and molecular epidemiologic characteristics of coagulase-negative staphylococcal bloodstream infections in intensive care neonates (Article)</title>
      <link>http://repub.eur.nl/res/pub/36270/</link>
      <pubDate>2007-07-01T00:00:00Z</pubDate>
      <description>OBJECTIVES: This study aimed to determine clinical characteristics of coagulase-negative staphylococcal (CoNS) sepsis in neonates, to assess the molecular epidemiology and biofilm forming properties of isolated strains, and to assess antibiotic susceptibility of clonal compared with incidentally occurring strains. METHODS: We performed a retrospective study on late-onset CoNS sepsis in infants in the neonatal intensive care unit of a Dutch university hospital in 2003. CoNS isolates were genotyped by restriction fragment end labeling and pulsed-field gel electrophoresis. Resistance profiles, biofilm production, and the presence of mecA and icaA were determined. RESULTS: Twenty-six percent of all 339 infants developed late-onset sepsis, 66% of these with CoNS sepsis. Eighty-six percent of all CoNS sepsis occurred in very low birth weight infants. Sixty-six CoNS strains were isolated. In multivariate analysis, small for gestational age and prolonged hospitalization were associated with CoNS sepsis. Among 3 restriction fragment end labeling clusters, we found 1 large cluster comprising 32% of the isolates. Biofilm producing Staphylococcus epidermidis were more frequently icaA positive than nonbiofilm formers (74% vs. 12%; P &lt; 0.001). In other species, this association was not found. Nearly all isolates were resistant to antibiotics. MecA was present in 87% of the isolates. Multiresistance occurred in 77% of all strains and in 73% of clustered strains. There was significantly less multiresistance among the largest cluster. CONCLUSIONS: Small for gestational age and prolonged hospitalization were associated with CoNS sepsis. The icaA gene is a predictor for biofilm formation in S. epidermidis, but not in other species. Multiresistance is not associated with clonality. </description>
    </item> <item>
      <title>Indinavir/low-dose ritonavir containing HAART in HIV-1 infected children has potent antiretroviral activity, but is associated with side effects and frequent discontinuation of treatment (Article)</title>
      <link>http://repub.eur.nl/res/pub/36081/</link>
      <pubDate>2007-06-01T00:00:00Z</pubDate>
      <description>We here present the study results of 21 HIV-1 infected children who were treated with indinavir plus low-dose ritonavir and two nucleoside reverse transcriptase inhibitors (NRTIs) for 48 weeks. Although this q12h HAART regimen had potent antiretroviral activity, it was frequently associated with side effects and discontinuation of therapy. </description>
    </item> <item>
      <title>Age-dependent pharmacokinetics of lamivudine in HIV-infected children (Article)</title>
      <link>http://repub.eur.nl/res/pub/35418/</link>
      <pubDate>2007-05-10T00:00:00Z</pubDate>
      <description>The recommended dose of lamivudine in children is higher when compared with adults: 4 mg/kg vs ∼2 mg/kg (150 mg) and administered twice a day. Limited data are available to demonstrate that this increased dose results in adequate exposure to lamivudine in children with human immunodeficiency virus (HIV) infection. Data were selected from children who were using lamivudine for at least 2 weeks before a full pharmacokinetic (PK) study was conducted. Lamivudine PK parameters were significantly related to age. The age of 6 years appeared to be a cutoff for a change in PK parameters of lamivudine, with children &lt;6 years of age (n=17) having a median area under the curve 43% lower and a median peak plasma concentration 47% lower (both P&lt;0.001) than older children (n=34). In conclusion, further investigation of the relationship between decreased lamivudine exposure and treatment outcome and long-term resistance development in younger children with HIV infection is warranted.</description>
    </item> <item>
      <title>Validation of an HIV-1 inactivation protocol that is compatible with intracellular drug analysis by mass spectrometry (Article)</title>
      <link>http://repub.eur.nl/res/pub/37060/</link>
      <pubDate>2007-02-15T00:00:00Z</pubDate>
      <description>Mass spectrometry is a powerful tool for studying the intracellular pharmacokinetics of antiretroviral drugs. However, the biohazard of HIV-1 calls for a safety protocol for such analyses. To this end, we extracted HIV-1 producing cells with methanol or ethanol at 4 °C. After extraction, no viral infectivity was detected, as shown by a reduction in infectious titers of more than 6 log. In addition, this protocol is compatible with the quantitative analysis of antiretroviral drugs in cell extracts using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) MS. Thus, using this protocol, infectious HIV-1 is inactivated and antiretroviral drugs are extracted from cells in a single step. </description>
    </item> <item>
      <title>CC and CXC chemokine levels in children with meningococcal sepsis accurately predict mortality and disease severity (Article)</title>
      <link>http://repub.eur.nl/res/pub/8281/</link>
      <pubDate>2006-01-01T00:00:00Z</pubDate>
      <description>INTRODUCTION: Chemokines are a superfamily of small peptides involved in
      leukocyte chemotaxis and in the induction of cytokines in a wide range of
      infectious diseases. Little is known about their role in meningococcal
      sepsis in children and their relationship with disease severity and
      outcome. METHODS: Monocyte chemoattractant protein (MCP)-1, macrophage
      inflammatory protein (MIP) 1alpha, growth-related gene product (GRO)-alpha
      and interleukin (IL)-8 were measured in 58 children with meningococcal
      sepsis or septic shock on admission and 24 hours thereafter. Nine patients
      died. Serum chemokine levels of survivors and nonsurvivors were compared,
      and the chemokine levels were correlated with prognostic disease severity
      scores and various laboratory parameters. RESULTS: Extremely high levels
      of all chemokines were measured in the children's acute-phase sera. These
      levels were significantly higher in nonsurvivors compared with survivors
      and in patients with septic shock compared with patients with sepsis (P &lt;
      0.0001). The cutoff values of 65,407 pg/ml, 85,427 pg/ml and 460 pg/ml for
      monocyte chemoattractant protein, for IL-8 and for macrophage inflammatory
      protein 1alpha, respectively, all had 100% sensitivity and 94-98%
      specificity for nonsurvival. Chemokine levels correlated better with
      disease outcome and severity than tumor necrosis factor (TNF)-alpha and
      correlated similarly to interleukin (IL)-6. In available samples 24 hours
      after admission, a dramatic decrease of chemokine levels was seen.
      CONCLUSION: Initial-phase serum levels of chemokines in patients with
      meningococcal sepsis can predict mortality and can correlate strongly with
      disease severity. Chemokines may play a key role in the pathophysiology of
      meningococcal disease and are potentially new targets for therapeutic
      approaches.</description>
    </item> <item>
      <title>Use of pooled urine samples and automated DNA isolation to achieve improved sensitivity and cost-effectiveness of large-scale testing for Chlamydia trachomatis in pregnant women. (Article)</title>
      <link>http://repub.eur.nl/res/pub/13912/</link>
      <pubDate>2005-09-01T00:00:00Z</pubDate>
      <description>The success of large-scale screening for Chlamydia trachomatis depends on the availability of noninvasive samples, low costs, and high-quality testing. To evaluate C. trachomatis testing with pregnant women, first-void urine specimens from 750 consecutive asymptomatic pregnant women from the Rotterdam area (The Netherlands) were collected. Initially, we investigated the performance of three different DNA isolation methods with 350 of these urines and 70 pools of 5 of the same subset of urine samples. The routinely used COBAS AMPLICOR test was compared to the COBAS AMPLICOR test with prior DNA isolation by use of the MagNA Pure large-volume kit and the MagNA Pure bacterial DNA isolation kit. The latter combination provided the best DNA test for pooled urines, with a sensitivity twice that of the other methods. Next, using all 750 urines, the COBAS AMPLICOR performance for individual testing was compared to pooled testing with the standard COBAS AMPLICOR procedure and subsequently to pooled testing with COBAS AMPLICOR in combination with the MagNA Pure bacterial DNA isolation kit. The sensitivity of COBAS AMPLICOR was 65% on individual and 42% on pooled urines but improved to 92% on pooled urines with the MagNA Pure bacterial DNA isolation kit, making this combination the best screening method. The C. trachomatis prevalence in this population appeared to be 6.4%. Additionally, the cost of the combined MagNA Pure bacterial DNA isolation kit and COBAS AMPLICOR method on pooled urines was only 56% of the cost of the standard COBAS AMPLICOR test applied to individual urines. Costs per positive case detected in the combined method were 39% of standard costs.</description>
    </item> <item>
      <title>Molecular epidemiology of pneumococcal colonization in response to pneumococcal conjugate vaccination in children with recurrent acute otitis media. (Article)</title>
      <link>http://repub.eur.nl/res/pub/13628/</link>
      <pubDate>2005-01-01T00:00:00Z</pubDate>
      <description>A randomized double-blind trial with a 7-valent pneumococcal conjugate vaccine was conducted in The Netherlands among 383 children, aged 1 to 7 years, with a history of recurrent acute otitis media. No effect of vaccination on the pneumococcal colonization rate was found. However, a shift in serotype distribution was clearly observed (R. Veenhoven et al., Lancet 361:2189-2195, 2003). We investigated the molecular epidemiology of 921 pneumococcal isolates retrieved from both the pneumococcal vaccine (PV) and control vaccine (CV) groups during the vaccination study. Within individuals a high turnover rate of pneumococcal restriction fragment end labeling genotypes, which was unaffected by vaccination, was observed. Comparison of the genetic structures before and after completion of the vaccination scheme revealed that, despite a shift in serotypes, there was clustering of 70% of the pneumococcal populations. The remaining isolates (30%) were equally observed in the PV and CV groups. In addition, the degree of genetic clustering was unaffected by vaccination. However, within the population genetic structure, nonvaccine serotype clusters with the serotypes 11, 15, and 23B became predominant over vaccine-type clusters after vaccination. Finally, overall pneumococcal resistance was low (14%), and, albeit not significant, a reduction in pneumococcal resistance as a result of pneumococcal vaccination was observed. Molecular surveillance of colonization in Dutch children shows no effect of pneumococcal conjugate vaccination on the degree of genetic clustering and the genetic structure of the pneumococcal population. However, within the genetic pneumococcal population structure, a clear shift toward nonvaccine serotype clusters was observed.</description>
    </item> <item>
      <title>Severe acute respiratory syndrome coronavirus (SARS-CoV) infection inhibition using spike protein heptad repeat-derived peptides. (Article)</title>
      <link>http://repub.eur.nl/res/pub/13389/</link>
      <pubDate>2004-06-01T00:00:00Z</pubDate>
      <description>The coronavirus SARS-CoV is the primary cause of the life-threatening severe acute respiratory syndrome (SARS). With the aim of developing therapeutic agents, we have tested peptides derived from the membrane-proximal (HR2) and membrane-distal (HR1) heptad repeat region of the spike protein as inhibitors of SARS-CoV infection of Vero cells. It appeared that HR2 peptides, but not HR1 peptides, were inhibitory. Their efficacy was, however, significantly lower than that of corresponding HR2 peptides of the murine coronavirus mouse hepatitis virus (MHV) in inhibiting MHV infection. Biochemical and electron microscopical analyses showed that, when mixed, SARS-CoV HR1 and HR2 peptides assemble into a six-helix bundle consisting of HR1 as a central triple-stranded coiled coil in association with three HR2 alpha-helices oriented in an antiparallel manner. The stability of this complex, as measured by its resistance to heat dissociation, appeared to be much lower than that of the corresponding MHV complex, which may explain the different inhibitory potencies of the HR2 peptides. Analogous to other class I viral fusion proteins, the six-helix complex supposedly represents a postfusion conformation that is formed after insertion of the fusion peptide, proposed here for coronaviruses to be located immediately upstream of HR1, into the target membrane. The resulting close apposition of fusion peptide and spike transmembrane domain facilitates membrane fusion. The inhibitory potency of the SARS-CoV HR2-peptides provides an attractive basis for the development of a therapeutic drug for SARS.</description>
    </item> <item>
      <title>Host-pathogen interaction during pneumococcal infection in patients with chronic obstructive pulmonary disease (Article)</title>
      <link>http://repub.eur.nl/res/pub/10303/</link>
      <pubDate>2004-01-01T00:00:00Z</pubDate>
      <description>Acute exacerbation is a frequent complication of chronic obstructive
      pulmonary disease (COPD). Recent studies suggested a role for bacteria
      such as Streptococcus pneumoniae in the development of acute exacerbation.
      For this study, we investigated the following in COPD patients: (i) the
      epidemiology of pneumococcal colonization and infection, (ii) the effect
      of pneumococcal colonization on the development of exacerbation, and (iii)
      the immunological response against S. pneumoniae. We cultured sputa of 269
      COPD patients during a stable state and during exacerbation of COPD and
      characterized 115 pneumococcal isolates by use of serotyping. Moreover, we
      studied serum immunoglobulin G (IgG) antibody titers, antibody avidities,
      and functional antibody titers against the seven conjugate vaccine
      serotypes in these patients. Colonization with only pneumococci
      (monocultures) increased the risk of exacerbation, with a hazard ratio of
      2.93 (95% confidence interval, 1.41 to 6.07). The most prevalent
      pneumococcal serotypes found were serotypes 19F, 3, 14, 9L/N/V, 23A/B, and
      11. We calculated the theoretical coverage for the 7- and 11-valent
      pneumococcal vaccines to be 60 and 73%, respectively. All patients had
      detectable IgG levels against the seven conjugate vaccine serotypes. These
      antibody titers were significantly lower than those in vaccinated healthy
      adults. Finally, on average, a 2.5-fold rise in serotype-specific and
      functional antibodies in S. pneumoniae-positive sputum cultures was
      observed during exacerbation. Our data indicate that pneumococcal
      colonization in COPD patients is frequently caused by vaccine serotype
      strains. Moreover, pneumococcal colonization is a risk factor for
      exacerbation of COPD. Finally, our findings demonstrate that COPD patients
      are able to mount a significant immune response to pneumococcal infection.
      COPD patients may therefore benefit from pneumococcal vaccination.</description>
    </item> <item>
      <title>Prevalence and clinical symptoms of human metapneumovirus infection in hospitalized patients (Article)</title>
      <link>http://repub.eur.nl/res/pub/15070/</link>
      <pubDate>2003-11-01T00:00:00Z</pubDate>
      <description>During a 17-month period, we performed retrospective analyses of the prevalence of and clinical symptoms associated with human metapneumovirus (hMPV) infection, among patients in a university hospital in The Netherlands. All available nasal-aspirate, throat-swab, sputum, and bronchoalveolar-lavage samples (N=1515) were tested for hMPV RNA by reverse-transcriptase polymerase chain reaction. hMPV RNA was detected in 7% of samples from patients with respiratory tract illnesses (RTIs) and was the second-most-detected viral pathogen in these patients during the last 2 winter seasons. hMPV was detected primarily in very young children and in immunocompromised individuals. In young children, clinical symptoms associated with hMPV infection were similar to those associated with human respiratory syncytial virus (hRSV) infection, but dyspnea, feeding difficulties, and hypoxemia were reported more frequently in hRSV-infected children. Treatment with antibiotics and corticosteroids was reported more frequently in hMPV-infected children. From these data, we conclude that hMPV is an important pathogen associated with RTI.</description>
    </item> <item>
      <title>Molecular epidemiology of penicillin-susceptible non-beta-lactam-resistant Streptococcus pneumoniae isolates from Greek children (Article)</title>
      <link>http://repub.eur.nl/res/pub/10272/</link>
      <pubDate>2003-01-01T00:00:00Z</pubDate>
      <description>A total of 128 Streptococcus pneumoniae isolates that were susceptible to
      penicillin but resistant to non-beta-lactam agents were isolated from
      young carriers in Greece and analyzed by antibiotic susceptibility
      testing, serotyping, restriction fragment end labeling (RFEL), and
      antibiotic resistance genotyping. The serotypes 6A/B (49%), 14 (14%),
      19A/F (11%), 11A (9%), 23A/F (4%), 15B/C (2%), and 21 (2%) were most
      prevalent in this collection. Of the isolates, 65% were erythromycin
      resistant, while the remaining isolates were tetracycline and/or
      trimethoprim-sulfamethoxazole resistant. Fifty-nine distinct RFEL types
      were identified. Twenty different RFEL clusters, harboring 2 to 19 strains
      each, accounted for 76% of all strains. Confirmatory multilocus sequence
      typing analysis of the genetic clusters showed the presence of three
      international clones (Tennessee(23F)-4, England(14)-9, and Greece(6B)-22)
      representing 30% of the isolates. The erm(B) gene was present in 70% of
      the erythromycin-resistant isolates, whereas 18 and 8% contained the
      mef(A) and mef(E) genes, respectively. The pneumococci representing
      erm(B), erm(A), and mef genes belonged to distinct genetic clusters. In
      total, 45% of all isolates were tetracycline resistant. Ninety-six percent
      of these isolates contained the tet(M) gene. In conclusion,
      penicillin-susceptible pneumococci resistant to non-beta-lactams are a
      genetically heterogeneous group displaying a variety of genotypes,
      resistance markers, and serotypes. This suggests that multiple genetic
      events lead to non-beta-lactam-resistant pneumococci in Greece.
      Importantly, most of these genotypes are capable of disseminating within
      the community.</description>
    </item> <item>
      <title>Radiosensitive SCID patients with Artemis gene mutations show a complete B-cell differentiation arrest at the pre-B-cell receptor checkpoint in bone marrow (Article)</title>
      <link>http://repub.eur.nl/res/pub/8235/</link>
      <pubDate>2003-01-01T00:00:00Z</pubDate>
      <description>Severe combined immunodeficiency disease (SCID) can be immunologically
      classified by the absence or presence of T, B, and natural killer (NK)
      cells. About 30% of T(-)B(-)NK(+) SCID patients carry mutations in the
      recombination activating genes (RAG). Some T(-)B(-)NK(+) SCID patients
      without RAG gene mutations are sensitive to ionizing radiation, and
      several of these radiosensitive (RS) SCID patients were recently shown to
      have large deletions or truncation mutations in the Artemis gene, implying
      a role for Artemis in DNA double-strand break (dsb) repair. We identified
      5 RS-SCID patients without RAG gene mutations, 4 of them with Artemis gene
      mutations. One patient had a large genomic deletion, but the other 3
      patients carried simple missense mutations in conserved amino acid
      residues in the SNM1 homology domain of the Artemis protein.
      Extrachromosomal V(D)J recombination assays showed normal and precise
      signal joint formation, but inefficient coding joint formation in
      fibroblasts of these patients, which could be complemented by the
      wild-type Artemis gene. The cells containing the missense mutations in the
      SNM1 homology domain had the same recombination phenotype as the cells
      with the large deletion, indicating that these amino acid residues are
      indispensable for Artemis function. Immunogenotyping and immunophenotyping
      of bone marrow samples of 2 RS-SCID patients showed the absence of
      complete V(H)-J(H) gene rearrangements and consequently a complete B-cell
      differentiation arrest at the pre-B-cell receptor checkpoint-that is, at
      the transition from CyIgmu(-) pre-B-I cells to CyIgmu(+) pre-B-II cells.
      The completeness of this arrest illustrates the importance of Artemis at
      this stage of lymphoid differentiation.</description>
    </item> <item>
      <title>Molecular epidemiology of pneumococcal carriage among children with upper respiratory tract infections in Hanoi, Vietnam (Article)</title>
      <link>http://repub.eur.nl/res/pub/10003/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>To investigate the molecular epidemiology of pneumococcal nasopharyngeal
      carriage in Hanoi, Vietnam, we studied 84 pneumococcal strains retrieved
      from children with upper respiratory tract infections. Serotypes 23F
      (32%), 19F (21%), 6B (13%), and 14 (10%) were found most often. A
      significant number of strains were antibiotic resistant. Fifty-two percent
      of the strains were (intermediate) resistant to penicillin, 87% were
      (intermediate) resistant to co-trimoxazole, 76% were resistant to
      tetracycline, 73% were resistant to erythromycin, and 39% were
      (intermediate) resistant to cefotaxime. Seventy-five percent were
      resistant to three or more classes of antibiotics. A high degree of
      genetic heterogeneity among the penicillin resistance genes was observed.
      In addition, the tetracycline resistance gene tet(M) and the erythromycin
      resistance gene erm(B) were predominantly observed among the isolates.
      Molecular analysis of the 84 isolates by restriction fragment end labeling
      (RFEL) revealed 35 distinct genotypes. Twelve of these genotypes
      represented a total of eight genetic clusters with 61 isolates (73%). The
      two largest clusters contained 24 and 12 isolates, and the isolates in
      those clusters were identical to the two internationally spreading
      multidrug-resistant clones Spain 23F-1 and Taiwan 19F-14, respectively.
      The remaining RFEL types were Vietnam specific, as they did not match the
      types in our reference collection of 193 distinct RFEL types from 16
      countries. Furthermore, 57 of the 61 horizontally spreading isolates (93%)
      in the eight genetic clusters were covered by the seven-valent conjugate
      vaccine, whereas this vaccine covered only 43% of the isolates with unique
      genotypes. According to the serotype distribution of the nasopharyngeal
      pneumococcal isolates, this study suggests a high potential benefit of the
      seven-valent pneumococcal conjugate vaccine for children in Hanoi.</description>
    </item> <item>
      <title>The immunophenotypic and immunogenotypic B-cell differentiation arrest in bone marrow of RAG-deficient SCID patients corresponds to residual recombination activities of mutated RAG proteins (Article)</title>
      <link>http://repub.eur.nl/res/pub/8222/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>The protein products of the recombination activating genes (RAG1 and RAG2)
      initiate the formation of immunoglobulin (Ig) and T-cell receptors, which
      are essential for B- and T-cell development, respectively. Mutations in
      the RAG genes result in severe combined immunodeficiency disease (SCID),
      generally characterized by the absence of mature B and T lymphocytes, but
      presence of natural killer (NK) cells. Biochemically, mutations in the RAG
      genes result either in nonfunctional proteins or in proteins with partial
      recombination activity. The mutated RAG genes of 9 patients from 7
      families were analyzed for their recombination activity using
      extrachromosomal recombination substrates, rearrangement of endogenous Ig
      loci in RAG gene-transfected nonlymphoid cells, or the presence of Ig gene
      rearrangements in bone marrow (BM). Recombination activity was virtually
      absent in all 6 patients with mutations in the RAG core domains, but
      partial activity was present in the other 3 RAG-deficient patients, 2 of
      them having Omenn syndrome with oligoclonal T lymphocytes. Using 4-color
      flow cytometry, we could define the exact stage at which B-cell
      differentiation was arrested in the BM of 5 RAG-deficient SCID patients.
      In 4 of 5 patients, the absence of recombination activity was associated
      with a complete B-cell differentiation arrest at the transition from
      cytoplasmic (Cy) Igmu(-) pre-B-I cells to CyIgmu(+) pre-B-II cells.
      However, the fifth patient showed low frequencies of precursor B cells
      with CyIgmu and surface membrane IgM, in line with the partial
      recombination activity of the patient's mutated RAG gene and the detection
      of in-frame Ig gene rearrangements in BM.</description>
    </item> <item>
      <title>Bench-to-bedside review: genetic influences on meningococcal disease (Article)</title>
      <link>http://repub.eur.nl/res/pub/8280/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>This review discusses the possible involvement of a variety of genetic
      polymorphisms on the course of meningococcal disease. It has been shown
      that several common genetic polymorphisms can either influence the
      susceptibility to meningococcal disease or can account for a higher
      mortality rate in patients. Gene polymorphisms concerning antibody
      receptors, lipopolysaccharide (LPS) binding receptors or proteins, innate
      complement proteins as well as cytokines and hemostatic proteins are
      described. The study of genetic polymorphisms might provide important
      insights in the pathogenesis of meningococcal disease and could make it
      possible to identify individuals who are at risk of either contracting or
      dying from meningococcal disease.</description>
    </item> <item>
      <title>Composition of precursor B-cell compartment in bone marrow from patients with X-linked agammaglobulinemia compared with healthy children (Article)</title>
      <link>http://repub.eur.nl/res/pub/9829/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>X-linked agammaglobulinemia (XLA) is characterized by a severe B-cell
      deficiency, resulting from a differentiation arrest in the bone marrow
      (BM). Because XLA is clinically and immunologically heterogeneous, we
      investigated whether the B-cell differentiation arrest in BM of XLA
      patients is heterogeneous as well. First, we analyzed BM samples from 19
      healthy children by flow cytometry. This resulted in a normal B-cell
      differentiation model with eight consecutive stages. Subsequently, we
      analyzed BM samples from nine XLA patients. Eight patients had amino acid
      substitutions in the Bruton's tyrosine kinase (BTK) domain or premature
      stop codons, resulting in the absence of functional BTK proteins. In seven
      of these eight patients a major differentiation arrest was observed at the
      transition between cytoplasmic Ig(mu-) pre-B-I cells and cytoplasmic
      Ig(mu+) pre-B-II cells, consistent with a role for BTK in pre-B-cell
      receptor signaling. However, one patient exhibited a very early arrest at
      the transition between pro-B cells and pre-B-I cells, which could not be
      explained by a different nature of the BTK mutation. We conclude that the
      absence of functional BTK proteins generally leads to an almost complete
      arrest of B-cell development at the pre-B-I to pre-B-II transition. The
      ninth XLA patient had a splice site mutation associated with the presence
      of low levels of wild-type BTK mRNA. His BM showed an almost normal
      composition of the precursor B-cell compartment, suggesting that low
      levels of BTK can rescue the pre-B-cell receptor signaling defect, but do
      not lead to sufficient numbers of mature B lymphocytes in the peripheral
      blood.</description>
    </item> <item>
      <title>Treatment with highly active antiretroviral therapy in human immunodeficiency virus type 1-infected children is associated with a sustained effect on growth (Article)</title>
      <link>http://repub.eur.nl/res/pub/9836/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>INTRODUCTION: Growth failure is a common feature of children with human
      immunodeficiency virus type 1 (HIV-1) infection. Children who are treated
      with mono or dual nucleoside analogue reverse transcriptase inhibitor
      (NRTI) therapy show a temporary increase in weight gain and linear growth
      rate. In adults, protease-inhibitor-containing antiretroviral therapy is
      associated with a sustained weight gain and increased body mass index
      (BMI). Experience with protease inhibitors and growth in children is still
      limited. The data mainly deal with short-term effects on growth.
      OBJECTIVE: To evaluate the effect of highly active antiretroviral therapy
      (HAART) on growth in children with HIV-1 infection. DESIGN AND METHODS: We
      analyzed selected growth parameters, clinical data, and laboratory results
      as part of a prospective, open, uncontrolled, multicenter study to
      evaluate the clinical, immunologic, and virologic response to HAART
      consisting of indinavir, zidovudine, and lamivudine in children with HIV-1
      infection. Height and weight were measured at 0, 12, 24, 36, 48, 60, 72,
      84, and 96 weeks after initiation of HAART. Information about the
      children's growth before enrollment in the study was retrieved from the
      hospital medical records and/or the school doctor or health center. BMI
      was calculated. z Scores were used to express the standard deviation (SD)
      in SD units from the Dutch reference curves for age and gender. Viral
      loads and CD4+ T-cell counts were examined prospectively and related to
      these growth parameters. z Scores were also calculated for CD4+ T-cell
      counts to correct for age-related differences. A z score of 0 represents
      the P50, which is exactly the age/sex-appropriate median. A height z score
      of -1 indicates that a child's height is 1 SD below the age- and
      gender-specific median height for the normal population. Virologic
      responders were defined as those who either reached an undetectable viral
      load (&lt;500 copies/mL) or had a &gt;1.5 log reduction in viral load compared
      with baseline at week 12 after the initiation of HAART, which was
      maintained during the follow-up period. RESULTS. PATIENTS: Twenty-four
      patients were included (age: 0.4-16.3 years at baseline), with a median
      HIV-1 RNA load of 105 925 copies/mL (5.03 log), a median CD4+ T-cell count
      of 0.586 x 10(9)/L (median z score: -2.28 SD), a median height z score of
      -1.22, a median weight z score of -0.74, and a median baseline BMI z score
      of -0.32. Eleven patients were naive to antiretroviral therapy, and 13
      patients had received previous treatment with NRTI monotherapy. Twenty
      children used indinavir and 4 children used nelfinavir as part of HAART.
      VIROLOGIC AND IMMUNOLOGIC RESPONSES TO HAART: Seventeen children were
      virologic responders, and 7 children were virologic nonresponders. In
      patients naive to NRTIs, median baseline viral loads were significantly
      higher than in pretreated patients. However, at weeks 48 and 96, there was
      no significant difference between the viral loads of both groups. At
      baseline, there was no significant difference in CD4+a T-cell z scores
      between virologic responders and nonresponders or between naive and
      pretreated patients. During 96 weeks of HAART, the increase of CD4+ T-cell
      z score was significantly higher in responders than in nonresponders. The
      increase in CD4+ T-cell z score was not significantly different for naive
      and pretreated patients. HEIGHT, WEIGHT, AND BMI z SCORE CHANGES: We found
      that there was a trend toward a significantly increased z score change
      during 96 weeks of HAART compared with the z score change before HAART
      initiation for height and weight, but not for BMI. GROWTH AND VIROLOGIC
      RESPONSE TO HAART: When the data were analyzed separately for virologic
      responders and nonresponders, virologic responders showed significant
      increases in height and weight. The height and weight of virologic
      nonresponders did not change significantly. The BMI did not change
      significantly in responders or in nonresponders. GROWTH AND IMMUNOLOGIC
      RESPONSE TO HAART: The increase of weight and BMI z scores from baseline
      correlated positively with the CD4+ T-cell z score increase from baseline.
      It did not correlate with absolute CD4+ T-cell count increase. Height z
      score increase did not correlate with CD4+ T-cell z score or with absolute
      CD4+ T-cell counts. GROWTH AND PREVIOUS NRTI TREATMENT: The height z score
      decrease from week -48 to baseline was significantly larger in naive than
      in pretreated patients. The weight and BMI z score change from week -48 to
      baseline was not significantly different for pretreated and naive
      patients. From baseline to week 96, the height and weight z score change
      increased significantly in naive patients but not in pretreated patients
      compared with the change from week -48 to baseline. The BMI z score did
      not change significantly over 96 weeks of HAART for naive or pretreated
      patients. GROWTH AND CLINICAL STAGE OF INFECTION: The clinical stage of
      infection according to the Centers for Disease Control and Prevention
      classification correlated negatively with the BMI z score and the weight z
      score at baseline but not with the height z score. Thus, children with the
      most severe clinical disease had the lowest BMI and weight z scores at
      baseline. The BMI z score increased more in children with more advanced
      clinical infection at baseline, who had lower BMI at baseline. The
      clinical stage of infection did not correlate with the change in weight z
      score from baseline to week 96. CONCLUSIONS: HAART has a positive
      influence effect on the growth of HIV-1-infected children. This effect is
      sustained for at least 96 weeks. Height and weight are favorably
      influenced in children in whom HAART leads to a reduction of the viral
      load of at least 1.5 log or to &lt;500 copies/mL and to an increase in the
      CD4+ T-cell z score. In contrast to the increase of the BMI in adults on
      HAART, BMI did not increase in all children effectively treated with
      HAART. BMI increased more in children with an advanced stage of infection
      and a poor nutritional status at baseline. Data from pretreated and naive
      patients were difficult to interpret, because the baseline characteristics
      of these 2 groups differed too much.</description>
    </item> <item>
      <title>Persistent sterile leukocyturia is associated with impaired renal function in human immunodeficiency virus type 1-infected children treated with indinavir (Article)</title>
      <link>http://repub.eur.nl/res/pub/9944/</link>
      <pubDate>2002-01-01T00:00:00Z</pubDate>
      <description>BACKGROUND: Prolonged administration of indinavir is associated with the
      occurrence of a variety of renal complications in adults. These
      well-documented side effects have restricted the use of this potent
      protease inhibitor in children. DESIGN: A prospective study to monitor
      indinavir-related nephrotoxicity in a cohort of 30 human immunodeficiency
      virus type 1-infected children treated with indinavir. METHODS: Urinary
      pH, albumin, creatinine, the presence of erythrocytes, leukocytes,
      bacteria and crystals, and culture were analyzed every 3 months for 96
      weeks. Serum creatinine levels were routinely determined at the same time
      points. Steady-state pharmacokinetics of indinavir were done at week 4
      after the initiation of indinavir. RESULTS: The cumulative incidence of
      persistent sterile leukocyturia (&gt; or =75 cells/ micro L in at least 2
      consecutive visits) after 96 weeks was 53%. Persistent sterile
      leukocyturia was frequently associated with a mild increase in the urine
      albumin/creatinine ratio and by microscopic hematuria. The cumulative
      incidence of serum creatinine levels &gt;50% above normal was 33% after 96
      weeks. Children with persistent sterile leukocyturia more frequently had
      serum creatinine levels of 50% above normal than those children without
      persistent sterile leukocyturia. In children younger than 5.6 years,
      persistent sterile leukocyturia was significantly more frequent than in
      older children. A higher cumulative incidence of persistent leukocyturia
      was found in children with an area under the curve &gt;19 mg/L x h or a peak
      serum level of indinavir &gt;12 mg/L. In 4 children, indinavir was
      discontinued because of nephrotoxicity. Subsequently, the serum creatinine
      levels decreased, the urine albumin/creatinine ratios returned to zero,
      and the leukocyturia disappeared within 3 months. CONCLUSIONS: Children
      treated with indinavir have a high cumulative incidence of persistent
      sterile leukocyturia. Children with persistent sterile leukocyturia more
      frequently had an increase in serum creatinine levels of &gt;50% above
      normal. Younger children have an additional risk for renal complications.
      The impairment of the renal function in these children occurred in the
      absence of clinical symptoms of nephrolithiasis. Indinavir-associated
      nephrotoxicity must be monitored closely, especially in children with risk
      factors such as persistent sterile leukocyturia, age &lt;5.6 years, an area
      under the curve of indinavir &gt;19 mg/L x h, and a C(max) &gt;12 mg/L.</description>
    </item> <item>
      <title>Safety and immunogenicity of a novel recombinant subunit respiratory syncytial virus vaccine (BBG2Na) in healthy young adults (Article)</title>
      <link>http://repub.eur.nl/res/pub/39746/</link>
      <pubDate>2001-12-01T00:00:00Z</pubDate>
      <description>A novel recombinant respiratory syncytial virus (RSV) subunit vaccine, designated BBG2Na, was administered to 108 healthy adults randomly assigned to receive 10, 100, or 300 μg of BBG2Na in aluminum phosphate or saline placebo. Each subject received 1, 2, or 3 intramuscular injections of the assigned dose at monthly intervals. Local and systemic reactions were mild, and no evidence of harmful properties of BBG2Na was reported. The highest ELISA and virus-neutralizing (VN) antibody responses were evident in the 100- and 300-μg groups; second or third injections provided no significant boosts against RSV-derived antigens. BBG2Na induced ≥2-fold and ≥4-fold increases in G2Na-specific ELISA units in up to 100% and 57% of subjects, respectively; corresponding RSV-A-specific responses were 89% and 67%. Furthermore, up to 71% of subjects had ≥2-fold VN titer increases. Antibody responses to 2 murine lung protective epitopes were also highly boosted after vaccination. Therefore, BBG2Na is safe, well tolerated, and highly immunogenic in RSV-seropositive adults.</description>
    </item> <item>
      <title>A newly discovered human pneumovirus isolated from young children with respiratory tract disease. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3798/</link>
      <pubDate>2001-07-09T00:00:00Z</pubDate>
      <description>From 28 young children in the Netherlands, we isolated a paramyxovirus that was identified as a tentative new member of the Metapneumovirus genus based on virological data, sequence homology and gene constellation. Previously, avian pneumovirus was the sole member of this recently assigned genus, hence the provisional name for the newly discovered virus: human metapneumovirus. The clinical symptoms of the children from whom the virus was isolated were similar to those caused by human respiratory syncytial virus infection, ranging from upper respiratory tract disease to severe bronchiolitis and pneumonia. Serological studies showed that by the age of five years, virtually all children in the Netherlands have been exposed to human metapneumovirus and that the virus has been circulating in humans for at least 50 years.</description>
    </item> <item>
      <title>Pneumococcal carriage in children in The Netherlands: a molecular epidemiological study (Article)</title>
      <link>http://repub.eur.nl/res/pub/9722/</link>
      <pubDate>2001-01-01T00:00:00Z</pubDate>
      <description>In 1999, Engelen and coworkers investigated colonization in Amsterdam
      among 259 children attending 16 day-care centers (DCCs) and among 276
      children who did not attend day-care centers (NDCCs). A 1.6- to 3.4-fold
      increased risk for nasopharyngeal colonization was observed in children
      attending DCCs compared with NDCC children, while no difference in
      antibiotic resistance was found between groups. The serotype and genotype
      distributions of 305 nasopharyngeal Streptococcus pneumoniae isolates of
      the latter study were investigated. The predominant serotypes in both the
      DCC and the NDCC groups included 19F (19 and 18%, respectively), 6B (14
      and 16%, respectively), 6A (13 and 7%, respectively), 23F (9 and 7%,
      respectively), and 9V (7 and 7%, respectively). The theoretical vaccine
      coverage of the 7-valent conjugate vaccine was 59% for the DCC children
      and 56% for the NDCC group. Genetic analysis of the pneumococcal isolates
      revealed 75% clustering among pneumococci isolated from DCC attendees
      versus 50% among the NDCC children. The average pneumococcal cluster size
      in the DCC group was 3.8 and 4.6 isolates for two respective sample dates
      (range, 2 to 13 isolates per cluster), while the average cluster size for
      the NDCC group was 3.0 (range, 2 to 6 isolates per cluster). Similar to
      observations made in other countries, these results indicate a higher risk
      for horizontal spread of pneumococci in Dutch DCCs than in the general
      population. This study emphasizes the importance of molecular
      epidemiological monitoring before, during, and after implementation of
      pneumococcal conjugate vaccination in national vaccination programs for
      children.</description>
    </item> <item>
      <title>Zanamivir susceptibility monitoring and characterization of influenza virus clinical isolates obtained during phase II clinical efficacy studies (Article)</title>
      <link>http://repub.eur.nl/res/pub/9217/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Zanamivir is a highly selective neuraminidase (NA) inhibitor with
      demonstrated clinical efficacy against influenza A and B virus infections.
      In phase II clinical efficacy trials (NAIB2005 and NAIB2008), virological
      substudies showed mean reductions in virus shedding after 24 h of
      treatment of 1.5 to 2.0 log(10) 50% tissue culture infective doses
      compared to a placebo, with no reemergence of virus after the completion
      of therapy. Paired isolates (n = 41) obtained before and during therapy
      with zanamivir demonstrated no shifts in susceptibility to zanamivir when
      measured by NA assays, although for a few isolates NA activity was too low
      to evaluate. In plaque reduction assays in MDCK cells, the susceptibility
      of isolates to zanamivir was extremely variable even at baseline and did
      not correlate with the speed of resolution of virus shedding. Isolates
      with apparent limited susceptibility to zanamivir by plaque reduction
      proved highly susceptible in vivo in the ferret model. Further sequence
      analysis of paired isolates revealed no changes in the hemagglutinin and
      NA genes in the majority of isolates. The few changes observed were all
      natural variants. No amino acid changes that had previously been
      identified in vitro as being involved with reduced susceptibility to
      zanamivir were observed. These studies highlighted problems associated
      with monitoring susceptibility to NA inhibitors in the clinic, in that no
      reliable cell-based assay is available. At present the NA assay is the
      best available predictor of susceptibility to NA inhibitors in vivo, as
      measured in the validated ferret model of infection.</description>
    </item> <item>
      <title>Autoimmune lymphoproliferative syndrome (ALPS) in a child from consanguineous parents: a dominant or recessive disease? (Article)</title>
      <link>http://repub.eur.nl/res/pub/9285/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Autoimmune lymphoproliferative syndrome (ALPS) is characterized by
          autoimmune features and lymphoproliferations and is generally caused by
          defective Fas-mediated apoptosis. This report describes a child with
          clinical features of ALPS without detectable Fas expression on freshly
          isolated blood leukocytes. Detection of FAS transcripts via real-time
          quantitative PCR made a severe transcriptional defect unlikely. Sequencing
          of the FAS gene revealed a 20-nucleotide duplication in the last exon
          affecting the cytoplasmic signaling domain. The patient was homozygous for
          this mutation, whereas the consanguineous parents and the siblings were
          heterozygous. The patient reported here is a human homologue of the
          Fas-null mouse, inasmuch as she carries an autosomal homozygous mutation
          in the FAS gene and she shows the severe and accelerated ALPS phenotype.
          The heterozygous family members did not have the ALPS phenotype,
          indicating that the disease-causing FAS mutation in this family is
          autosomal recessive.</description>
    </item> <item>
      <title>Longitudinal survey of lymphocyte subpopulations in the first year of life (Article)</title>
      <link>http://repub.eur.nl/res/pub/9310/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Age-matched reference values for lymphocyte subpopulations are generally
          obtained via cross-sectional studies, whereas patients are followed
          longitudinally. We performed a detailed longitudinal analysis of the
          changes in lymphocyte subpopulations in a group of 11 healthy infants
          followed from birth up to 1 y of age, with special attention for early
          developmental markers, markers of maturation, and markers of activation.
          We found that T and B lymphocytes increased at 1 and 6 wk of age,
          respectively. In contrast, NK cells showed a sharp decline directly after
          birth, suggesting that they are more important during pregnancy than
          thereafter. CD45RA+--mainly CD4+--naive T lymphocytes were high at birth,
          and increased further during the first year of life; they form a large
          expanding pool of cells, ready for participation in primary immune
          responses. The absolute counts of CD45RO+ memory T lymphocytes were
          similar in infants and adults, albeit with a lower level of expression of
          CD45RO on infant T lymphocytes. Almost all infant T lymphocytes expressed
          CD38 throughout the first year of life. The abundant expression of CD38 on
          an infant's T lymphocytes might be related to a greater metabolic need of
          the large population of naive untriggered cells that are continually
          involved in primary immune responses during the first year of life. The
          high B lymphocyte counts in infants mainly concerned CD38+ B lymphocytes
          throughout the first year of life. Also, the relative frequencies of CD1c+
          and CD5+ B lymphocytes were higher throughout the first year of life than
          in adults. Therefore, CD1c, CD5, and CD38 could be markers of untriggered
          B lymphocytes. In conclusion, our longitudinal survey of T and B
          lymphocytes, NK cells, and their subpopulations during the first year of
          life helps to complete the picture of lymphocyte development in infants.
          This information contributes to the correct interpretation of data from
          infants with possible immune disorders.</description>
    </item> <item>
      <title>The putative proteinase maturation protein A of Streptococcus pneumoniae is a conserved surface protein with potential to elicit protective immune responses (Article)</title>
      <link>http://repub.eur.nl/res/pub/9386/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Surface-exposed proteins often play an important role in the interaction
          between pathogenic bacteria and their host. We isolated a pool of
          hydrophobic, surface-associated proteins of Streptococcus pneumoniae. The
          opsonophagocytic activity of hyperimmune serum raised against this protein
          fraction was high and species specific. Moreover, the opsonophagocytic
          activity was independent of the capsular type and chromosomal genotype of
          the pneumococcus. Since the opsonophagocytic activity is presumed to
          correlate with in vivo protection, these data indicate that the protein
          fraction has the potential to elicit species-specific immune protection
          with cross-protection against various pneumococcal strains. Individual
          proteins in the extract were purified by two-dimensional gel
          electrophoresis. Antibodies raised against three distinct proteins
          contributed to the opsonophagocytic activity of the serum. The proteins
          were identified by mass spectrometry and N-terminal amino acid sequencing.
          Two proteins were the previously characterized pneumococcal surface
          protein A and oligopeptide-binding lipoprotein AmiA. The third protein was
          the recently identified putative proteinase maturation protein A (PpmA),
          which showed homology to members of the family of peptidyl-prolyl
          cis/trans isomerases. Immunoelectron microscopy demonstrated that PpmA was
          associated with the pneumococcal surface. In addition, PpmA was shown to
          elicit species-specific opsonophagocytic antibodies that were
          cross-reactive with various pneumococcal strains. This antibody
          cross-reactivity was in line with the limited sequence variation of ppmA.
          The importance of PpmA in pneumococcal pathogenesis was demonstrated in a
          mouse pneumonia model. Pneumococcal ppmA-deficient mutants showed reduced
          virulence. The properties of PpmA reported here indicate its potential for
          inclusion in multicomponent protein vaccines.</description>
    </item> <item>
      <title>N-terminal truncated human RAG1 proteins can direct T-cell receptor but not immunoglobulin gene rearrangements (Article)</title>
      <link>http://repub.eur.nl/res/pub/9420/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>The proteins encoded by RAG1 and RAG2 can initiate gene recombination by
          site-specific cleavage of DNA in immunoglobulin and T-cell receptor (TCR)
          loci. We identified a new homozygous RAG1 gene mutation (631delT) that
          leads to a premature stop codon in the 5' part of the RAG1 gene. The
          patient carrying this 631delT RAG1 gene mutation died at the age of 5
          weeks from an Omenn syndrome-like T(+)/B(- )severe combined
          immunodeficiency disease. The high number of blood T-lymphocytes (55 x
          10(6)/mL) showed an almost polyclonal TCR gene rearrangement repertoire
          not of maternal origin. In contrast, B-lymphocytes and immunoglobulin gene
          rearrangements were hardly detectable. We showed that the 631delT RAG1
          gene can give rise to an N-terminal truncated RAG1 protein, using an
          internal AUG codon as the translation start site. Consistent with the
          V(D)J recombination in T cells, this N-terminal truncated RAG1 protein was
          active in a plasmid V(D)J recombination assay. Apparently, the N-terminal
          truncated RAG1 protein can recombine TCR genes but not immunoglobulin
          genes. We conclude that the N-terminus of the RAG1 protein is specifically
          involved in immunoglobulin gene rearrangements.</description>
    </item> <item>
      <title>Differential protein expression in phenotypic variants of Streptococcus pneumoniae (Article)</title>
      <link>http://repub.eur.nl/res/pub/9425/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Streptococcus pneumoniae undergoes spontaneous phase variation resulting
          in opaque and transparent colony forms. Differences in colony opacity
          correlate with differences in virulence: the transparent variants are more
          capable of colonizing the nasopharynx, whereas the opaque variants show
          increased virulence during systemic infections. To gain insight into the
          pathogenesis of pneumococcal disease at the molecular level, protein
          expression patterns of the phenotypic variants of two pneumococcal strains
          were compared by high-resolution two-dimensional protein electrophoresis.
          In comparison with transparent variants, the opaque variants reduced the
          expression of two proteins and overexpressed one protein. The proteins
          were identified by mass spectrometric analysis. The protein overexpressed
          in the opaque phenotype revealed significant homology to elongation factor
          Ts of Helicobacter pylori. One of the two proteins that were
          underexpressed in the opaque variants revealed significant homology to the
          proteinase maturation protein PrtM of Lactocobacillus paracasei, a member
          of the family of peptidyl-prolyl cis/trans isomerases. A consensus
          lipoprotein signal sequence suggests that the putative proteinase
          maturation protein A, designated PpmA, is located at the surface of the
          pneumococcus and may play a role in the maturation of surface or secreted
          proteins. The second underexpressed protein was identified as pyruvate
          oxidase, SpxB. The lower SpxB expression in opaque variants most probably
          explains the reduced production of hydrogen peroxide, a reaction product
          of SpxB, in this variant. Since a spxB-defective pneumococcal mutant has
          decreased ability to colonize the nasopharynx (B. Spellerberg, D. R.
          Cundell, J. Sandros, B. J. Pearce, I. Idanpaan-Heikkila, C. Rosenow, and
          H. R. Masure, 1996. Mol. Microbiol. 19:803-813, 1996), our data suggest
          that SpxB plays an important role in enhancing the ability of transparent
          variants to efficiently colonize the nasopharynx.</description>
    </item> <item>
      <title>Molecular epidemiology of penicillin-nonsusceptible Streptococcus pneumoniae among children in Greece (Article)</title>
      <link>http://repub.eur.nl/res/pub/9548/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>A total of 145 penicillin-nonsusceptible Streptococcus pneumoniae strains
          were isolated from young carriers in Greece and analyzed by antibiotic
          susceptibility testing, serotyping, restriction fragment end labeling
          (RFEL), and penicillin-binding protein (PBP) genotyping. The serotypes 23A
          and 23F (54%), 19A and 19F (25%), 9V (5%), 15A, 15B, and 15C (4%), 6A and
          6B (4%), and 21 (4%) were most prevalent in this collection. Fifty-three
          distinct RFEL types were identified. Sixteen different RFEL clusters,
          harboring 2 to 32 strains each, accounted for 82% of all strains. Eight of
          these genetic clusters representing 60% of the strains were previously
          identified in other countries. A predominant lineage of 66 strains (46%)
          harboring five RFEL types and the serotypes 19F and 23F was closely
          related to the pandemic clone Spain(23F)-1 (genetic relatedness of &gt; or
          =85%). Another lineage, representing 11 strains, showed close genetic
          relatedness to the pandemic clone France(9V)-3. Another lineage of 8
          serotype 21 strains was Greece specific since the RFEL types were not
          observed in an international collection of 193 genotypes from 16 different
          countries. Characterization of the PBP genes pbp1a, pbp2b, and pbp2x
          revealed 20 distinct PBP genotypes of which PBP type 1-1-1, initially
          observed in the pandemic clones 23F and 9V, was predominantly present in
          11 RFEL types in this Greek collection of penicillin-nonsusceptible
          strains (55%). Sixteen PBP types covering 52 strains (36%) were Greece
          specific. This study underlines the strong contribution of
          penicillin-resistant international clones to the prevalence and spread of
          penicillin-nonsusceptible pneumococci among young children in Greece.</description>
    </item> <item>
      <title>Genetic relatedness within serotypes of penicillin-susceptible Streptococcus pneumoniae isolates (Article)</title>
      <link>http://repub.eur.nl/res/pub/9549/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>The molecular epidemiological characteristics of all Streptococcus
          pneumoniae strains isolated in a nationwide manner from patients with
          meningitis in The Netherlands in 1994 were investigated. Restriction
          fragment end labeling analysis demonstrated 52% genetic clustering among
          these penicillin-susceptible strains, a value substantially lower than the
          percentage of clustering among Dutch penicillin-nonsusceptible strains.
          Different serotypes were found within 8 of the 28 genetic clusters,
          suggesting that horizontal transfer of capsular genes is common among
          penicillin-susceptible strains. The degree of genetic clustering was much
          higher among serotype 3, 7F, 9V, and 14 isolates than among isolates of
          other serotypes, i.e., 6A, 6B, 18C, 19F, and 23F. We further studied the
          molecular epidemiological characteristics of pneumococci of serotype 3,
          which is considered the most virulent serotype and which is commonly
          associated with invasive disease in adults. Fifty epidemiologically
          unrelated penicillin-susceptible serotype 3 invasive isolates originating
          from the United States (n = 27), Thailand (n = 9), The Netherlands (n =
          8), and Denmark (n = 6) were analyzed. The vast majority of the serotype 3
          isolates (74%) belonged to two genetically distinct clades that were
          observed in the United States, Denmark, and The Netherlands. These data
          indicate that two serotype 3 clones have been independently disseminated
          in an international manner. Seven serotype 3 isolates were less than 85%
          genetically related to the other serotype 3 isolates. Our observations
          suggest that the latter isolates originated from horizontal transfer of
          the capsular type 3 gene locus to other pneumococcal genotypes. In
          conclusion, epidemiologically unrelated serotype 3 isolates were
          genetically more related than those of other serotypes. This observation
          suggests that serotype 3 has evolved only recently or has remained
          unchanged over long periods.</description>
    </item> <item>
      <title>Clinical and virologic response to combination treatment with indinavir, zidovudine, and lamivudine in children with human immunodeficiency virus-1 infection: A multicenter study in The Netherlands. (Article)</title>
      <link>http://repub.eur.nl/res/pub/3735/</link>
      <pubDate>2000-01-01T00:00:00Z</pubDate>
      <description>Abstract
OBJECTIVE: To evaluate the clinical, immunologic, and virologic response to indinavir, zidovudine, and lamivudine in children with human immunodeficiency virus-1 (HIV-1) infection.
STUDY DESIGN: Twenty-eight HIV-1-infected children (3 months to 16 years of age) with or without prior treatment with reverse-transcriptase inhibitors and a HIV-1 RNA &gt;5000 copies/mL and/or a CD4 cell count less than the lower limit of the age-specific reference value were treated with indinavir, zidovudine, and lamivudine. Pharmacokinetics of indinavir were determined in each child.
RESULTS: The combination treatment was well tolerated in the majority of patients. Clinical improvement was seen in all patients. After 6 months of therapy, 70% of the patients had an HIV-1 RNA load below 500 copies/mL, whereas 48% of the children had a viral load below 40 copies/mL. Relative CD4 cell counts in relation to the lower limit of the age-specific reference value increased significantly from a median value of 79% at baseline to 106% after 6 months of therapy. The doses of indinavir necessary to achieve area under the curve values comparable to adult values varied from 1250 mg/m(2)/d to 2450 mg/m(2)/d.
CONCLUSIONS: Highly active antiretroviral therapy consisting of indinavir, zidovudine, and lamivudine in children reduced HIV-1 RNA to less than 500 copies/mL in 70% of the children within 6 months. Improved CD4 cell counts were observed in most patients, as was a better clinical condition (no invasive or opportunistic infections, increased weight gain). Side effects of the triple therapy were mild. Highly active antiretroviral therapy can be used as successfully in children as in adults.</description>
    </item> <item>
      <title>Kinderen en microben: een pas de deux (Inaugural Lecture)</title>
      <link>http://repub.eur.nl/res/pub/7491/</link>
      <pubDate>1999-02-05T00:00:00Z</pubDate>
      <description></description>
    </item> <item>
      <title>Correction for erythroid cell contamination in microassay for immunophenotyping of neonatal lymphocytes (Article)</title>
      <link>http://repub.eur.nl/res/pub/9083/</link>
      <pubDate>1999-01-01T00:00:00Z</pubDate>
      <description>Immunophenotyping of blood lymphocyte subpopulations in neonates and young
          infants is hampered by the limited amount of blood that can be collected.
          Contamination of the flow cytometric "lympho-gate" by normoblasts and
          analysed erythrocytes, and therefore the underestimation of the relative
          frequencies of lymphocyte subpopulations, interferes with the precise
          calculation of absolute counts. A microassay was developed by adapting the
          lysed whole blood technique. Triple immunostaining in a single antibody
          staining step was used to reduce washing steps and cell loss. Introduction
          of a triple staining for CD71 (expressed by erythroid precursors),
          glycophorin A (GpA, expressed by all erythroid cells), and CD45 (expressed
          by all leucocytes) permitted the relative frequencies of normoblasts
          (CD71(+)/GpA+/CD45(-) population) and unlysed erythrocytes
          (CD71(-)/GpA+/CD45(-) population)to be identified and measured within the
          "lympho-gate" of neonatal cord blood samples. Particularly high
          frequencies were found (median: 31%) in cord blood samples from preterm
          neonates. These erythroid cells disappear rapidly by 1 week of age The
          relative frequencies of erythroid cells can be used to calculate correct
          lymphocyte subpopulation values. Using only 0.5-0.8 ml of blood, this
          micro- assay would also be suitable for rapid prenatal immunodiagnosis of
          congenital immunodeficiencies.</description>
    </item> <item>
      <title>Molecular characterization of pneumococcal nasopharynx isolates collected from children during their first 2 years of life (Article)</title>
      <link>http://repub.eur.nl/res/pub/8865/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>Pneumococcal colonization was studied in 19 children monitored from birth
          through the age of 2 years. For this purpose, pneumococcal isolates were
          characterized by capsular typing, restriction fragment end labeling
          (RFEL), and penicillin-binding protein (PBP) genotyping. Fifty-eight
          isolates were collected and were found to belong to 10 capsular types, 31
          RFEL types, and 7 PBP genotypes. Thirty-nine percent of the isolates had
          reduced susceptibility to penicillin. All seven highly resistant strains
          (MICs, &gt; 1 microgram/ml) were identical to the pandemic clone 23F.
          Children were culture positive between one and eight times at 13 scheduled
          visits. Although the infants were frequently recolonized with different
          strains, colonization with one particular strain often persisted for
          several months. Isolation of a previously detected capsular type was
          common, and the chromosomal homogeneity tended to be high when it
          occurred. Horizontal transfer of capsular genes between strains of
          different RFEL types was demonstrated in one child. The ecological
          advantage of transfer of capsular genes is unclear unless survival of the
          organism on a mucosal surface may be linked to immunoprotective pressure
          against particular capsular types.</description>
    </item> <item>
      <title>Persistence of clones of coagulase-negative staphylococci among premature neonates in neonatal intensive care units: two-center study of bacterial genotyping and patient risk factors (Article)</title>
      <link>http://repub.eur.nl/res/pub/8879/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>From 1 January 1995 until 1 January 1996, we studied the molecular
      epidemiology of blood isolates of coagulase-negative staphylococci (CoNS)
      in the Neonatal Intensive Care Units (NICUs) of the Sophia Children's
      Hospital (SCH; Rotterdam, The Netherlands) and the Wilhelmina Children's
      Hospital (WCH; Utrecht, The Netherlands). The main goal of the present
      study was to detect putatively endemic clones of CoNS persisting in these
      NICUs. Pulsed-field gel electrophoresis was used to detect the possible
      presence of endemic clones of clinical significance. In addition, clinical
      data of patients in the SCH were analyzed retrospectively to identify risk
      factors for the acquisition of positive blood cultures. In both centers,
      endemic CoNS clones were persistently present. Thirty-three percent of the
      bacterial isolates derived from blood cultures in the SCH belonged to a
      single genotype. In the WCH, 45% of all bacterial strains belonged to a
      single clone. These clones were clearly different from each other, which
      implies that site specificity is involved. Interestingly, we observe that
      the clonal type in the SCH differed significantly from the incidentally
      occurring strains with respect to both the average pH and partial CO2
      pressure of the patient's blood at the time of bacterial culture. We found
      that the use of intravascular catheters, low gestational age, and a long
      hospital stay were important risk factors for the development of a
      putative CoNS infection. When the antibiotic susceptibility of the
      bacterial isolates was assessed, a clear correlation between the nature of
      the antibiotics most frequently used as a first line of defense versus the
      resistance profile was observed. We conclude that the intensive use of
      antibiotics in an NICU setting with highly susceptible patients causes
      selection of multiresistant clones of CoNS which subsequently become
      endemic.</description>
    </item> <item>
      <title>Complement activation in relation to capillary leakage in children with septic shock and purpura (Article)</title>
      <link>http://repub.eur.nl/res/pub/8919/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>To assess the relationship between capillary leakage and inflammatory
          mediators during sepsis, blood samples were taken on hospital admission,
          as well as 24 and 72 h later, from 52 children (median age, 3.3 years)
          with severe meningococcal sepsis, of whom 38 survived and 14 died.
          Parameters related to cytokines (interleukin 6 [IL-6] IL-8, plasma
          phospholipase A2, and C-reactive protein [CRP]), to neutrophil
          degranulation (elastase and lactoferrin), to complement activation (C3a,
          C3b/c, C4b/c, and C3- and C4-CRP complexes), and to complement regulation
          (functional and inactivated C1 inhibitor and C4BP) were determined. The
          degree of capillary leakage was derived from the amount of plasma infused
          and the severity of disease by assessing the pediatric risk of mortality
          (PRISM) score. Levels of IL-6, IL-8, C3b/c, C3-CRP complexes, and C4BP on
          admission, adjusted for the duration of skin lesions, were significantly
          different in survivors and nonsurvivors (C3b/c levels were on average 2.2
          times higher in nonsurvivors, and C3-CRP levels were 1.9 times higher in
          survivors). Mortality was independently related to the levels of C3b/c and
          C3-CRP complexes. In agreement with this, levels of complement activation
          products correlated well with the PRISM score or capillary leakage. Thus,
          these data show that complement activation in patients with severe
          meningococcal sepsis is associated with a poor outcome and a more severe
          disease course. Further studies should reveal whether complement
          activation may be a target for therapeutical intervention in this disease.</description>
    </item> <item>
      <title>Use of recombinant nucleoproteins in enzyme-linked immunosorbent assays for detection of virus-specific immunoglobulin A (IgA) and IgG antibodies in influenza virus A- or B-infected patients (Article)</title>
      <link>http://repub.eur.nl/res/pub/8934/</link>
      <pubDate>1998-01-01T00:00:00Z</pubDate>
      <description>The nucleoprotein genes of influenza virus A/Netherlands/018/94 (H3N2) and
      influenza virus B/Harbin/7/94 were cloned into the bacterial expression
      vector pMalC to yield highly purified recombinant influenza virus A and B
      nucleoproteins. With these recombinant influenza nucleoproteins,
      enzyme-linked immunosorbent assays (ELISAs) were developed for the
      detection of influenza virus A- and B-specific immunoglobulin A (IgA) and
      IgG serum antibodies. Serum samples were collected at consecutive time
      points after the onset of clinical symptoms from patients with confirmed
      influenza virus A or B infections. Nucleoprotein-specific IgA antibodies
      were detected in 41.2% of influenza virus A-infected patients and in 66.
      7% of influenza virus B-infected patients on day 6 after the onset of
      clinical symptoms. In serum samples taken on day 21 (influenza virus
      A-infected patients) or day 28 (influenza virus B-infected patients),
      nucleoprotein-specific IgA antibodies could be detected in 58.8 and 58.3%
      of influenza virus A- and B-infected patients, respectively. At the same
      time, IgG antibody rises were detected in 88.2% of influenza virus
      A-infected patients and in 95.8% of influenza virus B-infected patients.
      On comparison, hemagglutination inhibition assays detected antibody titer
      rises in 81.3 and 72.7% of patients infected with influenza viruses A and
      B, respectively. In contrast to the detection of nucleoprotein-specific
      IgG antibodies or hemagglutination-inhibiting antibodies, the detection of
      nucleoprotein-specific IgA antibodies does not require paired serum
      samples and therefore can be considered an attractive alternative for the
      rapid serological diagnosis of influenza.</description>
    </item> <item>
      <title>Intrathecal production of interleukin-12 and gamma interferon in patients with bacterial meningitis (Article)</title>
      <link>http://repub.eur.nl/res/pub/8651/</link>
      <pubDate>1997-01-01T00:00:00Z</pubDate>
      <description>To assess the role of interleukin-12 (IL-12) and gamma interferon
          (IFN-gamma) in children with bacterial meningitis, bioactive IL-12 (p70)
          and the inactive subunit p40 and IFN-gamma were measured in serum and
          cerebrospinal fluid (CSF) from 35 children with bacterial meningitis and
          10 control subjects. The production of IFN-gamma is induced by IL-12 with
          tumor necrosis factor alpha (TNF-alpha) as a costimulator and inhibited by
          IL-10. CSF concentrations of IL-12 p40 as well as those of IFN-gamma were
          markedly elevated, whereas IL-12 p70 was hardly detectable. Detectable CSF
          levels of IFN-gamma correlated positively with IL-12 p40 (r = 0.40, P =
          0.02) and TNF-alpha (r = 0.46, P = 0.04) but not with IL-6, IL-8, or
          IL-10. In contrast to CSF levels of TNF-alpha, IL-12, and IL-10, those of
          IFN-gamma were significantly higher in patients with pneumococcal
          meningitis than in children with meningitis caused by Haemophilus
          influenzae and Neisseria meningitidis, presumably because of a high CSF
          TNF-alpha/IL-10 ratio in the former. We suggest that IL-12- and
          TNF-alpha-induced IFN-gamma production may contribute to the natural
          immunity against microorganisms in the CSF compartment during the acute
          phase of bacterial meningitis.</description>
    </item> <item>
      <title>Novel BOX repeat PCR assay for high-resolution typing of Streptococcus pneumoniae strains (Article)</title>
      <link>http://repub.eur.nl/res/pub/8615/</link>
      <pubDate>1996-01-01T00:00:00Z</pubDate>
      <description>Typing data obtained by specifically targeting a single, high-stringency
      PCR at the pneumococcal BOX repeat element for 28 strains of Streptococcus
      pneumoniae completely corroborated the resolutions attained by five
      genotypic procedures as described by Hermans et al. (P.W.M. Hermans, M.
      Sluijter, T. Hoogenboezem, H. Heersma, A. van Belkum, and R. de Groot, J.
      Clin. Microbiol. 33:1606-1612, 1995). All pairs of strains, except one,
      derived from both the cerebrospinal fluid and blood of the same individual
      were shown to be identical. Moreover, other, epidemiologically unrelated
      isolates were demonstrated to be unique. Considering the combined data
      from the five typing techniques applied previously as the "gold standard,"
      the single BOX PCR test demonstrated excellent resolving powers while
      maintaining epidemiological linkage.</description>
    </item> <item>
      <title>Genetic characterization of trimethoprim resistance in Haemophilus influenzae (Article)</title>
      <link>http://repub.eur.nl/res/pub/8632/</link>
      <pubDate>1996-01-01T00:00:00Z</pubDate>
      <description>We previously demonstrated that trimethoprim (Tmp) resistance in
          Haemophilus influenzae is mediated by chromosomally encoded dihydrofolate
          reductase (DHFR) with a modified primary structure and distinct kinetic
          properties. To gain insight into the relationship of the DHFR structure
          and the level of Tmp resistance that it confers on the host bacterium, we
          cloned and characterized the folH genes of one Tmp-susceptible and two
          Tmp-resistant H. influenzae strains. Differences were observed between
          Tmp-susceptible and Tmp-resistant isolates both in the promoter region and
          in the coding sequences. The effect of differences between H. influenzae
          folH genes on Tmp susceptibility was investigated in Escherichia coli.
          Various folH gene hybrids were constructed, and their influence on Tmp
          susceptibility was determined. Resistance in E. coli mediated by folH from
          H. influenzae strain R1047 was associated with alterations in the promoter
          and the central part of folH. In contrast, the E. coli Tmp resistance
          phenotype associated with the folH gene of H. influenzae R1042 was
          characterized by alterations in one or more of three amino acid residues
          at the C-terminal part of the protein. These data indicate that Tmp
          resistance is not only related to alterations in the promoter region of
          the folH gene and the Tmp binding domains at the N-terminal and central
          part of DHFR. Alterations in the C-terminal part may also cause Tmp
          resistance, probably as a result of a change in secondary structure and
          the subsequent loss of Tmp binding affinity.</description>
    </item> <item>
      <title>Influenza types and patient population. (Letter To Editor)</title>
      <link>http://repub.eur.nl/res/pub/3541/</link>
      <pubDate>1995-01-01T00:00:00Z</pubDate>
      <description></description>
    </item> <item>
      <title>Comparative study of five different DNA fingerprint techniques for molecular typing of Streptococcus pneumoniae strains (Article)</title>
      <link>http://repub.eur.nl/res/pub/8543/</link>
      <pubDate>1995-01-01T00:00:00Z</pubDate>
      <description>The aim of this study was to identify the strengths and weaknesses of five
      DNA fingerprint methods for epidemiological typing of Streptococcus
      pneumoniae. We investigated the usefulness of (i) ribotyping, (ii) BOX
      fingerprinting with the BOX repetitive sequence of S. pneumoniae as a DNA
      probe, (iii) PCR fingerprinting with a primer homologous to the
      enterobacterial repetitive intergenic consensus sequence, (iv)
      pulsed-field gel electrophoresis of large DNA fragments, and (v)
      restriction fragment end labeling to detect restriction fragment length
      polymorphism of small DNA fragments. Twenty-eight S. pneumoniae strains
      isolated from the blood and/or cerebrospinal fluid of 21 patients were
      analyzed. Genetic clustering among the 28 strains was independent of the
      DNA fingerprint technique used. However, the discriminatory power and the
      similarity values differed significantly among the individual techniques.
      BOX fingerprinting, pulsed-field gel electrophoresis, and restriction
      fragment end labeling provided the highest degree of discriminatory power.
      Furthermore, the ease with which computerized fingerprint analysis could
      be conducted also varied significantly among the techniques. Ribotyping,
      BOX fingerprinting, and restriction fragment end labeling were very
      suitable techniques for accurate computerized data analysis. Because of
      their high discriminatory potential and ease of accurate analysis, we
      conclude that BOX fingerprinting and restriction fragment end labeling are
      the most suitable techniques to type pneumococcal strains.</description>
    </item> <item>
      <title>Amoxicillin pharmacokinetics in preterm infants with gestational ages of less than 32 weeks (Article)</title>
      <link>http://repub.eur.nl/res/pub/8554/</link>
      <pubDate>1995-01-01T00:00:00Z</pubDate>
      <description>The multiple-dose pharmacokinetics of amoxicillin (AM [administered twice
      daily in a 25-mg/kg of body weight intravenous dose]) in 17 preterm
      infants (11 males; gestational age, 29 +/- 1.9 weeks; birth weight, 1,175
      +/- 278 g) were evaluated on day 3 of life. Blood samples were collected
      from an arterial catheter at 0, 0.5, 1, 2, 4, 8, and 12 h after the
      intravenous dose. A high-performance liquid chromatography method was used
      to determine AM concentrations in serum. AM pharmacokinetics followed a
      one-compartment open model. The glomerular filtration rates of all
      patients were simultaneously studied by means of the 24-h continuous
      inulin infusion technique. The elimination half-life, apparent volume of
      distribution, and total body clearance of AM (mean +/- standard deviation)
      were 6.7 +/- 1.7 h, 584 +/- 173 ml, and 62.4 +/- 23.3 ml/h, respectively.
      The mean (+/- standard deviation) AM peak and trough levels were 53.6 +/-
      9.1 and 16.0 +/- 4.9 mg/liter, respectively. All infants had a serum
      trough level above 5 mg/liter. The total body clearance and apparent
      volume of distribution of AM and the clearance of inulin increased
      significantly with increasing gestational age. The total body clearance of
      AM (1.0 +/- 0.4 ml/min) and the clearance of inulin (1.0 +/- 0.3 ml/min)
      were similar. The total body clearance of AM increased significantly with
      increasing clearance of inulin. We conclude that an AM dose of 25 mg/kg
      every 12 h given to preterm infants in the first week of life with
      gestational ages of less than 32 weeks results in serum levels well above
      the MIC for major microorganisms involved in neonatal infections.</description>
    </item> <item>
      <title>Once-daily versus twice-daily administration of ceftazidime in the preterm infant (Article)</title>
      <link>http://repub.eur.nl/res/pub/8601/</link>
      <pubDate>1995-01-01T00:00:00Z</pubDate>
      <description>Ceftazidime pharmacokinetics in 28 preterm infants (gestational ages, 25.6
          to 31.9 weeks) were studied on day 3 of life. Patients with suspected
          septicemia were randomized on day 1 of life in two groups. One group (n =
          13) was administered 25 mg of ceftazidime per kg of body weight once
          daily, and the other (n = 15) was given 25 mg of ceftazidime per kg twice
          daily. Both groups also received 25 mg of amoxicillin per kg twice daily.
          Blood samples were collected on day 3 of life with an arterial catheter at
          0, 0.5, 1, 2, 4, 8, and 12 h after an intravenous bolus injection. An
          additional blood sample was taken at 24 h from the group dosed once a day.
          High-performance liquid chromatography was used to determine serum
          ceftazidime concentrations. The pharmacokinetics of ceftazidime were best
          described by using a one-compartment model. The half-life for the
          elimination of the drug from serum, apparent volume of distribution, total
          body clearance of ceftazidime, and inulin clearance were not significantly
          different for both groups. The ceftazidime/inulin clearance ratio was 0.72
          for both groups. However, trough concentrations in serum for the
          twice-daily group were significantly (P &lt; 0.001) higher (42.0 +/- 13.4
          mg/liter) than those for the once-daily group (13.1 +/- 4.7 mg/liter). The
          latter concentrations were all still substantially higher than the MIC of
          ceftazidime for major neonatal pathogens. We conclude that the currently
          recommended dosage of 25 mg of ceftazidime per kg twice daily for preterm
          infants with gestational ages below 32 weeks may be adjusted during the
          first days of life to one daily dose at 25 mg/kg, provided that for the
          empirical treatment of septicemia, amoxicillin at 25 mg/kg is also given
          twice daily.</description>
    </item> <item>
      <title>Antibiotic Resistance in  Haemophilus in Influenzae (Doctoral Thesis)</title>
      <link>http://repub.eur.nl/res/pub/10478/</link>
      <pubDate>1991-06-19T00:00:00Z</pubDate>
      <description></description>
    </item>
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