2011-06-01
Genome-wide association study confirms extant PD risk loci among the Dutch
Publication
Publication
European Journal of Human Genetics , Volume 19 - Issue 6 p. 655- 661
In view of the population-specific heterogeneity in reported genetic risk factors for Parkinson's disease (PD), we conducted a genome-wide association study (GWAS) in a large sample of PD cases and controls from the Netherlands. After quality control (QC), a total of 514 799 SNPs genotyped in 772 PD cases and 2024 controls were included in our analyses. Direct replication of SNPs within SNCA and BST1 confirmed these two genes to be associated with PD in the Netherlands (SNCA, rs2736990: P1.63 × 105, OR1.325 and BST1, rs12502586: P1.63 × 103, OR1.337). Within SNCA, two independent signals in two different linkage disequilibrium (LD) blocks in the 3′ and 5′ ends of the gene were detected. Besides, post-hoc analysis confirmed GAK/DGKQ, HLA and MAPT as PD risk loci among the Dutch (GAK/DGKQ, rs2242235: P1.22 × 10 4, OR1.51; HLA, rs4248166: P4.39 × 10 5, OR1.36; and MAPT, rs3785880: P1.9 × 10 3, OR1.19).
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| doi.org/10.1038/ejhg.2010.254, hdl.handle.net/1765/26273 | |
| European Journal of Human Genetics | |
| Organisation | Erasmus MC: University Medical Center Rotterdam |
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Simón-Sánchez, J., van Hilten, J., van de Warrenburg, B., Post, B., Berendse, H. W., Arepalli, S., … Heutink, P. (2011). Genome-wide association study confirms extant PD risk loci among the Dutch. European Journal of Human Genetics, 19(6), 655–661. doi:10.1038/ejhg.2010.254 |
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