Volume 9, issue 6, e02112-18, 2018, https://doi.org/10.1128/mBio.02112-18. <br/>In Data Set S1, the Raw Data Accession and Experiment Accession numbers of 516 samples were interchanged. The numbers have been corrected, and the file has been replaced online.<br/>In the main text, the isolates were referred to using the descriptor “sample” from Data Set S1, not any of the corrected accession numbers. Therefore, this change does not affect the main text of the article in any way. Nonetheless, we apologize to the readers for any inconvenience caused by this error.