PredictABEL: An R package for the assessment of risk prediction models
European Journal of Epidemiology , Volume 26 - Issue 4 p. 261- 264
The rapid identification of genetic markers for multifactorial diseases from genome-wide association studies is fuelling interest in investigating the predictive ability and health care utility of genetic risk models. Various measures are available for the assessment of risk prediction models, each addressing a different aspect of performance and utility. We developed PredictABEL, a package in R that covers descriptive tables, measures and figures that are used in the analysis of risk prediction studies such as measures of model fit, predictive ability and clinical utility, and risk distributions, calibration plot and the receiver operating characteristic plot. Tables and figures are saved as separate files in a user-specified format, which include publicationquality EPS and TIFF formats. All figures are available in a ready-made layout, but they can be customized to the preferences of the user. The package has been developed for the analysis of genetic risk prediction studies, but can also be used for studies that only include non-genetic risk factors. PredictABELis freely available at the websites of GenABEL (http://www.genabel.org) and CRAN (http://cran.r-project.org/).
|Assessment, Genetic, Measures, Risk prediction, Software|
|European Journal of Epidemiology|
|Organisation||Erasmus MC: University Medical Center Rotterdam|
Kundu, S, Aulchenko, Y.S, Tikka-Kleemola, P, & Janssens, A.C.J.W. (2011). PredictABEL: An R package for the assessment of risk prediction models. European Journal of Epidemiology, 26(4), 261–264. doi:10.1007/s10654-011-9567-4