While graphs with continuous node attributes arise in many applications, stateof-the-art graph kernels for comparing continuous-attributed graphs suffer from a high runtime complexity. For instance, the popular shortest path kernel scales as O(n4), where n is the number of nodes. In this paper, we present a class of graph kernels with computational complexity O(n 2(m+log n+δ2 +d)), where is the graph diameter, m is the number of edges, and d is the dimension of the node attributes. Due to the sparsity and small diameter of real-world graphs, these kernels typically scale comfortably to large graphs. In our experiments, the presented kernels outperform state-of-the-art kernels in terms of speed and accuracy on classification benchmark datasets.

hdl.handle.net/1765/87002
27th Annual Conference on Neural Information Processing Systems, NIPS 2013
Erasmus MC: University Medical Center Rotterdam

Feragen, A., Kasenburg, N., Petersen, J., de Bruijne, M., & Borgwardt, K. (2013). Scalable kernels for graphs with continuous attributes. Presented at the 27th Annual Conference on Neural Information Processing Systems, NIPS 2013. Retrieved from http://hdl.handle.net/1765/87002