Automatic identification of variables in epidemiological datasets using logic regression
Background: For an individual participant data (IPD) meta-analysis, multiple datasets must be transformed in a consistent format, e.g. using uniform variable names. When large numbers of datasets have to be processed, this can be a time-consuming and error-prone task. Automated or semi-automated identification of variables can help to reduce the workload and improve the data quality. For semi-automation high sensitivity in the recognition of matching variables is particularly important, because it allows creating software which for a target variable presents a choice of source variables, from which a user can choose the matching one, with only low risk of having missed a correct source variable. Methods: For each variable in a set of target variables, a number of simple rules were manually created. With logic regression, an optimal Boolean combination of these rules was searched for every target variable, using a random subset of a large database of epidemiological and clinical cohort data (construction subset). In a second subset of this database (validation subset), this optimal combination rules were validated. Results: In the construction sample, 41 target variables were allocated on average with a positive predictive value (PPV) of 34%, and a negative predictive value (NPV) of 95%. In the validation sample, PPV was 33%, whereas NPV remained at 94%. In the construction sample, PPV was 50% or less in 63% of all variables, in the validation sample in 71% of all variables. Conclusions: We demonstrated that the application of logic regression in a complex data management task in large epidemiological IPD meta-analyses is feasible. However, the performance of the algorithm is poor, which may require backup strategies.
|Keywords||Data management, Epidemiology, Logic regression, Meta-analysis|
|Persistent URL||dx.doi.org/10.1186/s12911-017-0429-1, hdl.handle.net/1765/99627|
|Journal||B M C Medical Informatics and Decision Making|
Lorenz, M.W, Abdi, N.A. (Negin Ashtiani), Scheckenbach, F, Pflug, A, Bulbul, A, Catapano, A.L, … Kavousi, M. (2017). Automatic identification of variables in epidemiological datasets using logic regression. B M C Medical Informatics and Decision Making, 17(1). doi:10.1186/s12911-017-0429-1